miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 93728 0.66 0.914583
Target:  5'- -cGGAGAAaaGUCGCgugaGCCGUCGg -3'
miRNA:   3'- gaCCUCUUcgCGGCGaug-CGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 204743 0.66 0.914583
Target:  5'- gUGGugauGGAGGCGCCGC--CGCCGcCc- -3'
miRNA:   3'- gACC----UCUUCGCGGCGauGCGGCaGua -5'
13975 5' -57.8 NC_003521.1 + 102593 0.66 0.914583
Target:  5'- -cGGGGcuGGCGCUgGCcACGUCGUCGUc -3'
miRNA:   3'- gaCCUCu-UCGCGG-CGaUGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 74158 0.66 0.908809
Target:  5'- -cGGGGcccAGGUGCCGCUggccgacuGCGCCG-CGg -3'
miRNA:   3'- gaCCUC---UUCGCGGCGA--------UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 18789 0.66 0.908809
Target:  5'- gUGGAGGgccAGCGCUGCUuucGCGUgGcCAa -3'
miRNA:   3'- gACCUCU---UCGCGGCGA---UGCGgCaGUa -5'
13975 5' -57.8 NC_003521.1 + 85561 0.66 0.908809
Target:  5'- -cGGGccuGAGGCGCCGC--CGCCGcCGc -3'
miRNA:   3'- gaCCU---CUUCGCGGCGauGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 102483 0.66 0.908809
Target:  5'- --aGAGAGGC-CCGagACGCCGUCGc -3'
miRNA:   3'- gacCUCUUCGcGGCgaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 213719 0.66 0.908219
Target:  5'- -cGGGGAugcccagccagacGGCGCCGCagaAgGCCGUgGUg -3'
miRNA:   3'- gaCCUCU-------------UCGCGGCGa--UgCGGCAgUA- -5'
13975 5' -57.8 NC_003521.1 + 23549 0.66 0.902813
Target:  5'- gUGGuGGccAGCGCCuGCUccuCGuCCGUCAUg -3'
miRNA:   3'- gACCuCU--UCGCGG-CGAu--GC-GGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 175508 0.66 0.902813
Target:  5'- uCUGGuGAAGUGCCGCgu-GUgGUCu- -3'
miRNA:   3'- -GACCuCUUCGCGGCGaugCGgCAGua -5'
13975 5' -57.8 NC_003521.1 + 223942 0.66 0.896598
Target:  5'- -aGGGGGucgaGGCgGCCGCggggaACGCaCGUCGUa -3'
miRNA:   3'- gaCCUCU----UCG-CGGCGa----UGCG-GCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 135652 0.66 0.896598
Target:  5'- -gGGGGGcccAGCGUCgGCgGCGUCGUCAc -3'
miRNA:   3'- gaCCUCU---UCGCGG-CGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 112935 0.66 0.896598
Target:  5'- -aGcGAGAcGGUGCCGCUgugcACGCCGcgCAUc -3'
miRNA:   3'- gaC-CUCU-UCGCGGCGA----UGCGGCa-GUA- -5'
13975 5' -57.8 NC_003521.1 + 178973 0.66 0.896598
Target:  5'- aUGGAcAGGCGCCGCgguuccgcgGCGCCcUCc- -3'
miRNA:   3'- gACCUcUUCGCGGCGa--------UGCGGcAGua -5'
13975 5' -57.8 NC_003521.1 + 206606 0.66 0.890167
Target:  5'- -cGGcGAcacgGGCGCCGuCUACGCCGcCc- -3'
miRNA:   3'- gaCCuCU----UCGCGGC-GAUGCGGCaGua -5'
13975 5' -57.8 NC_003521.1 + 29688 0.66 0.890167
Target:  5'- aCUGGAGGAuGauCCGCUGCGUCcUCGg -3'
miRNA:   3'- -GACCUCUU-CgcGGCGAUGCGGcAGUa -5'
13975 5' -57.8 NC_003521.1 + 130295 0.66 0.890167
Target:  5'- cCUGGGcGAG-GCCGCgGCGCCGcgCAUc -3'
miRNA:   3'- -GACCUcUUCgCGGCGaUGCGGCa-GUA- -5'
13975 5' -57.8 NC_003521.1 + 5667 0.66 0.890167
Target:  5'- gUGGGGGgucgagacacgGGCGCCcguccGCggggaacggGCGCCGUCAc -3'
miRNA:   3'- gACCUCU-----------UCGCGG-----CGa--------UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 193155 0.66 0.890167
Target:  5'- aUGGcGGggGCGuCUGCUGCuGCUGUUg- -3'
miRNA:   3'- gACC-UCuuCGC-GGCGAUG-CGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 6237 0.66 0.890167
Target:  5'- aUGGAGAccGGCGCuccCGCggACGCCGa--- -3'
miRNA:   3'- gACCUCU--UCGCG---GCGa-UGCGGCagua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.