Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13975 | 5' | -57.8 | NC_003521.1 | + | 166121 | 0.69 | 0.752646 |
Target: 5'- -gGGAGccGCuGCCGCggcgcCGCCGUCGc -3' miRNA: 3'- gaCCUCuuCG-CGGCGau---GCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 218224 | 0.7 | 0.733833 |
Target: 5'- -cGGAGGucaGGCGaCCGCagGgGCCGUCAc -3' miRNA: 3'- gaCCUCU---UCGC-GGCGa-UgCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 183318 | 0.71 | 0.646031 |
Target: 5'- -cGuGAucAGCGCCGUgcGCGCCGUCAUg -3' miRNA: 3'- gaC-CUcuUCGCGGCGa-UGCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 159841 | 0.78 | 0.318282 |
Target: 5'- -aGGAGAAGgGCCGCUGCuacucgcgccccGUCGUCAUg -3' miRNA: 3'- gaCCUCUUCgCGGCGAUG------------CGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 78610 | 0.67 | 0.839432 |
Target: 5'- -cGGAGAGGCaCCGaCUGCGCgGcUCGc -3' miRNA: 3'- gaCCUCUUCGcGGC-GAUGCGgC-AGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 175833 | 0.69 | 0.78901 |
Target: 5'- -cGGuccaAGAAGCGgCGC-ACGUCGUCGUg -3' miRNA: 3'- gaCC----UCUUCGCgGCGaUGCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 167596 | 0.7 | 0.705014 |
Target: 5'- aUGGAGAgcggcgcgcagaGGCGCCGCagGCGCUcgggGUCGg -3' miRNA: 3'- gACCUCU------------UCGCGGCGa-UGCGG----CAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 116914 | 0.78 | 0.304437 |
Target: 5'- gUGGAGAacAGCGCCGC-GCGCCGaCAg -3' miRNA: 3'- gACCUCU--UCGCGGCGaUGCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 209153 | 0.69 | 0.78901 |
Target: 5'- cCUGGAGAA-CGCCgaGCUGCGCCu---- -3' miRNA: 3'- -GACCUCUUcGCGG--CGAUGCGGcagua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 49665 | 0.78 | 0.303757 |
Target: 5'- uCUGGAGAGGgGCCgggcgagcgcggcGCUGuCGCCGUCAg -3' miRNA: 3'- -GACCUCUUCgCGG-------------CGAU-GCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 90254 | 0.7 | 0.714689 |
Target: 5'- -aGGAGccGCGCCGCcgcCGCCGcCAc -3' miRNA: 3'- gaCCUCuuCGCGGCGau-GCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 19451 | 0.69 | 0.760986 |
Target: 5'- -gGGGGAGGCGCggcgggaccauguCGCUGCGCgGcCAg -3' miRNA: 3'- gaCCUCUUCGCG-------------GCGAUGCGgCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 39001 | 0.7 | 0.69528 |
Target: 5'- gCUGGuGGAuguGGCGCUGC-ACGgCCGUCAg -3' miRNA: 3'- -GACC-UCU---UCGCGGCGaUGC-GGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 223342 | 0.71 | 0.655932 |
Target: 5'- -cGGc--GGCGCCGCUACcgguGCCGUCGUc -3' miRNA: 3'- gaCCucuUCGCGGCGAUG----CGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 185100 | 0.75 | 0.445505 |
Target: 5'- gCUGG-GAGGCGCUGC-GCGCCGaCAUg -3' miRNA: 3'- -GACCuCUUCGCGGCGaUGCGGCaGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 157049 | 0.77 | 0.354938 |
Target: 5'- -cGGAGGAGCGCgGCgggggGCGCCGcCAc -3' miRNA: 3'- gaCCUCUUCGCGgCGa----UGCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 200462 | 0.67 | 0.862353 |
Target: 5'- gUGGAGAAG-GCCcuGCgcaGCGCCGUgAUc -3' miRNA: 3'- gACCUCUUCgCGG--CGa--UGCGGCAgUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 8922 | 0.67 | 0.8549 |
Target: 5'- -gGGAGAAGaGCCGCUGcCGCagGUUAc -3' miRNA: 3'- gaCCUCUUCgCGGCGAU-GCGg-CAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 74345 | 0.68 | 0.823257 |
Target: 5'- gCUGGAu-GGCGCUGCUGCGCgGc--- -3' miRNA: 3'- -GACCUcuUCGCGGCGAUGCGgCagua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 155134 | 0.68 | 0.797791 |
Target: 5'- cCUGGAGAaccugcGGCGCgUGCUggACGCCGgcUCGg -3' miRNA: 3'- -GACCUCU------UCGCG-GCGA--UGCGGC--AGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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