Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13976 | 5' | -61.1 | NC_003521.1 | + | 207574 | 0.98 | 0.008445 |
Target: 5'- cCGGCCUGCUG-GCGUGUGCCAGCUCAa -3' miRNA: 3'- -GCCGGACGACgCGCACACGGUCGAGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 22356 | 0.68 | 0.65769 |
Target: 5'- gGGCCacUGCgcccacgGCGUG-GUGCCGGC-CAu -3' miRNA: 3'- gCCGG--ACGa------CGCGCaCACGGUCGaGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 168833 | 0.68 | 0.677052 |
Target: 5'- gGGCCccagcgaGCUGCGCGUcacGgacGCCgGGCUCAu -3' miRNA: 3'- gCCGGa------CGACGCGCA---Ca--CGG-UCGAGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 184998 | 0.66 | 0.788259 |
Target: 5'- cCGGCCUGCcGCGC-UGcGaCUGGUUCGa -3' miRNA: 3'- -GCCGGACGaCGCGcACaC-GGUCGAGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 155136 | 0.73 | 0.376402 |
Target: 5'- uGGagaaCCUGCgGCGCGUGcuggacGCCGGCUCGg -3' miRNA: 3'- gCC----GGACGaCGCGCACa-----CGGUCGAGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 74351 | 0.73 | 0.392194 |
Target: 5'- uGGCgCUGCUGCGCGgcuacgGCCAGUgCGg -3' miRNA: 3'- gCCG-GACGACGCGCaca---CGGUCGaGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 85374 | 0.72 | 0.450723 |
Target: 5'- aCGGgCUGCUGCgacucgcccaGCGggucgGCCAGCUCGc -3' miRNA: 3'- -GCCgGACGACG----------CGCaca--CGGUCGAGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 206677 | 0.71 | 0.504496 |
Target: 5'- aGGCCUuCgUGCGCGUGgGCCuggcccuGCUCAu -3' miRNA: 3'- gCCGGAcG-ACGCGCACaCGGu------CGAGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 40689 | 0.69 | 0.579086 |
Target: 5'- gCGGCgUGCUGUggaacgaaggugaGUGUGUGCUGGCgcgCGg -3' miRNA: 3'- -GCCGgACGACG-------------CGCACACGGUCGa--GU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 198791 | 0.68 | 0.647977 |
Target: 5'- gGGUagcaGCUGCGUG-GUGCCGGCg-- -3' miRNA: 3'- gCCGga--CGACGCGCaCACGGUCGagu -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 42572 | 0.69 | 0.59938 |
Target: 5'- aCGGCUaucGCUGCgGCGUcaGCCAGCUa- -3' miRNA: 3'- -GCCGGa--CGACG-CGCAcaCGGUCGAgu -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 24282 | 0.7 | 0.541836 |
Target: 5'- uGGCC-GCUGCaC-UGUGCUGGCUCGa -3' miRNA: 3'- gCCGGaCGACGcGcACACGGUCGAGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 138788 | 0.75 | 0.290954 |
Target: 5'- cCGGCCgUGCUGCGCGccGUGgCCcagguGCUCAa -3' miRNA: 3'- -GCCGG-ACGACGCGCa-CAC-GGu----CGAGU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 98820 | 0.68 | 0.63728 |
Target: 5'- aGGCguugcagCUGCUugGCGCGg--GCCAGCUCc -3' miRNA: 3'- gCCG-------GACGA--CGCGCacaCGGUCGAGu -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 74887 | 0.73 | 0.353531 |
Target: 5'- aCGGCgCUGCUGCGCGagacgGUGgCGGCg-- -3' miRNA: 3'- -GCCG-GACGACGCGCa----CACgGUCGagu -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 138391 | 0.7 | 0.513732 |
Target: 5'- gCGGCCUGCgGCGCGUcuggaucgccguGUGgaCCAGcCUCu -3' miRNA: 3'- -GCCGGACGaCGCGCA------------CAC--GGUC-GAGu -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 33935 | 0.68 | 0.638253 |
Target: 5'- uGGUgCUGCUGUGCGgcGUGCgCGGCgagCAg -3' miRNA: 3'- gCCG-GACGACGCGCa-CACG-GUCGa--GU- -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 13981 | 0.68 | 0.667384 |
Target: 5'- gGGCCUGCccgGCGCGgcgGCgGGCg-- -3' miRNA: 3'- gCCGGACGa--CGCGCacaCGgUCGagu -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 18430 | 0.73 | 0.361045 |
Target: 5'- gCGGCCUGCUcaagacGCGCGgccUGUGCC-GCUUc -3' miRNA: 3'- -GCCGGACGA------CGCGC---ACACGGuCGAGu -5' |
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13976 | 5' | -61.1 | NC_003521.1 | + | 194291 | 0.72 | 0.445518 |
Target: 5'- aGGcCCUGgUGCGCcuggagaagacgcccGUGUGCCAGCa-- -3' miRNA: 3'- gCC-GGACgACGCG---------------CACACGGUCGagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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