miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13977 3' -50.3 NC_003521.1 + 37437 0.66 0.999544
Target:  5'- uGGcCGGGACCUgaggCGACCGCGgCGg -3'
miRNA:   3'- cCC-GUUCUGGAagaaGUUGGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 143650 0.66 0.999544
Target:  5'- cGGCGcuuccacacGGACC-UCUUCcACCACGa-- -3'
miRNA:   3'- cCCGU---------UCUGGaAGAAGuUGGUGCagu -5'
13977 3' -50.3 NC_003521.1 + 219088 0.66 0.999544
Target:  5'- -aGCGAGACCUg-UUCGGgCAuCGUCAc -3'
miRNA:   3'- ccCGUUCUGGAagAAGUUgGU-GCAGU- -5'
13977 3' -50.3 NC_003521.1 + 19751 0.66 0.999436
Target:  5'- cGGCGucGGGCUUccaCUUCAGCCACcgcucgGUCAu -3'
miRNA:   3'- cCCGU--UCUGGAa--GAAGUUGGUG------CAGU- -5'
13977 3' -50.3 NC_003521.1 + 127186 0.66 0.999436
Target:  5'- aGGCAcagguagaAGACCUUCUgcagCGuCCAcuCGUCGu -3'
miRNA:   3'- cCCGU--------UCUGGAAGAa---GUuGGU--GCAGU- -5'
13977 3' -50.3 NC_003521.1 + 91751 0.66 0.999436
Target:  5'- aGGGCGugcgAGAgCg----CGGCCGCGUCGa -3'
miRNA:   3'- -CCCGU----UCUgGaagaaGUUGGUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 115412 0.66 0.999436
Target:  5'- uGGGCGAGAUCaucccgCUgcagCAGCaCAUGUUAu -3'
miRNA:   3'- -CCCGUUCUGGaa----GAa---GUUG-GUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 68606 0.66 0.999306
Target:  5'- cGGGaccucGGCCUUCUUCGAcucggcgcuguCCACG-CAg -3'
miRNA:   3'- -CCCguu--CUGGAAGAAGUU-----------GGUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 19461 0.66 0.999306
Target:  5'- cGGCGGGACCaugUCgcugcgCGGCCAgGUgCAg -3'
miRNA:   3'- cCCGUUCUGGa--AGaa----GUUGGUgCA-GU- -5'
13977 3' -50.3 NC_003521.1 + 72807 0.66 0.999306
Target:  5'- cGGGCGccaccaagaaAGACCUg-UUCGACgC-CGUCAc -3'
miRNA:   3'- -CCCGU----------UCUGGAagAAGUUG-GuGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 178441 0.66 0.999306
Target:  5'- uGGUuguuGGCCUgggugaacgUCAACCGCGUCu -3'
miRNA:   3'- cCCGuu--CUGGAaga------AGUUGGUGCAGu -5'
13977 3' -50.3 NC_003521.1 + 154319 0.66 0.999306
Target:  5'- cGGCGAcauGGCCgaCUUCAACgCuuuCGUCAa -3'
miRNA:   3'- cCCGUU---CUGGaaGAAGUUG-Gu--GCAGU- -5'
13977 3' -50.3 NC_003521.1 + 180675 0.66 0.999262
Target:  5'- uGGcGCGAGGCCUgcgugCUcgacaccuccucgcUCAGCaguCGCGUCAc -3'
miRNA:   3'- -CC-CGUUCUGGAa----GA--------------AGUUG---GUGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 118921 0.66 0.999151
Target:  5'- cGGGCcGGGCCaUCUgcccCAGCCAggagcccaUGUCGc -3'
miRNA:   3'- -CCCGuUCUGGaAGAa---GUUGGU--------GCAGU- -5'
13977 3' -50.3 NC_003521.1 + 139308 0.66 0.999151
Target:  5'- -uGCAGcGCCUgCUggUCGGCCGCGUCu -3'
miRNA:   3'- ccCGUUcUGGAaGA--AGUUGGUGCAGu -5'
13977 3' -50.3 NC_003521.1 + 46443 0.66 0.999151
Target:  5'- cGGCGGGGCUgcgggggCUggUCGGCCuCGUCGu -3'
miRNA:   3'- cCCGUUCUGGaa-----GA--AGUUGGuGCAGU- -5'
13977 3' -50.3 NC_003521.1 + 205841 0.66 0.999151
Target:  5'- uGGCcccgGAGACCUUCUgCGcCCGCGaUCu -3'
miRNA:   3'- cCCG----UUCUGGAAGAaGUuGGUGC-AGu -5'
13977 3' -50.3 NC_003521.1 + 234420 0.66 0.998968
Target:  5'- cGGCAAGACCcgUCgcc-GCCGCGg-- -3'
miRNA:   3'- cCCGUUCUGGa-AGaaguUGGUGCagu -5'
13977 3' -50.3 NC_003521.1 + 187786 0.66 0.998968
Target:  5'- uGGGCuGGACCcaCUUCGACaGCGgCGg -3'
miRNA:   3'- -CCCGuUCUGGaaGAAGUUGgUGCaGU- -5'
13977 3' -50.3 NC_003521.1 + 133554 0.66 0.998968
Target:  5'- uGGGCAGcGCCUaUCagCGcCUACGUCAg -3'
miRNA:   3'- -CCCGUUcUGGA-AGaaGUuGGUGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.