miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 3' -53 NC_003521.1 + 140036 0.66 0.992912
Target:  5'- -gCAGAaGGCCAugaGCGGCAGGAaGgccUCGu -3'
miRNA:   3'- gaGUCUcUCGGU---UGUCGUCCU-Ca--AGC- -5'
13979 3' -53 NC_003521.1 + 223228 0.66 0.992912
Target:  5'- -gCAGguAGAGCCccuGCAGCAGcGAGagCGu -3'
miRNA:   3'- gaGUC--UCUCGGu--UGUCGUC-CUCaaGC- -5'
13979 3' -53 NC_003521.1 + 195832 0.66 0.992912
Target:  5'- -cCAGAucGAGCgAgaucucgcGCGGCAGG-GUUCGg -3'
miRNA:   3'- gaGUCU--CUCGgU--------UGUCGUCCuCAAGC- -5'
13979 3' -53 NC_003521.1 + 4197 0.66 0.992912
Target:  5'- uCUCuGGGAGCUGAaAGC-GGAGggCGg -3'
miRNA:   3'- -GAGuCUCUCGGUUgUCGuCCUCaaGC- -5'
13979 3' -53 NC_003521.1 + 216288 0.66 0.991884
Target:  5'- gCUCGuGGAGCgGACgacguuGGCGGGGGUgaugUCGg -3'
miRNA:   3'- -GAGUcUCUCGgUUG------UCGUCCUCA----AGC- -5'
13979 3' -53 NC_003521.1 + 223081 0.66 0.991213
Target:  5'- aCUCGGAG-GCCAGCGaacgugcguagaucuGCGGGAuggCGg -3'
miRNA:   3'- -GAGUCUCuCGGUUGU---------------CGUCCUcaaGC- -5'
13979 3' -53 NC_003521.1 + 136927 0.66 0.990742
Target:  5'- -cCAGGGGcGCCAGCGuGacuGGGAGUUCc -3'
miRNA:   3'- gaGUCUCU-CGGUUGU-Cg--UCCUCAAGc -5'
13979 3' -53 NC_003521.1 + 104685 0.66 0.990742
Target:  5'- gCUCgAGGGGGCCGugGGCGGcg--UCGa -3'
miRNA:   3'- -GAG-UCUCUCGGUugUCGUCcucaAGC- -5'
13979 3' -53 NC_003521.1 + 141979 0.66 0.989477
Target:  5'- gUCAG-GAGCU-GCAGCGGGAGc--- -3'
miRNA:   3'- gAGUCuCUCGGuUGUCGUCCUCaagc -5'
13979 3' -53 NC_003521.1 + 80089 0.66 0.989072
Target:  5'- aUCGGGGGuGCCGACGGCgcgaccacgauguuGGGAGcgCc -3'
miRNA:   3'- gAGUCUCU-CGGUUGUCG--------------UCCUCaaGc -5'
13979 3' -53 NC_003521.1 + 43663 0.66 0.988655
Target:  5'- -gCAGAGAGgaggagaggaggagCAGCAGCAGGAGgagaCGa -3'
miRNA:   3'- gaGUCUCUCg-------------GUUGUCGUCCUCaa--GC- -5'
13979 3' -53 NC_003521.1 + 103139 0.66 0.986545
Target:  5'- --gGGAGAGCCcaggGGCAGCAGGcGcgUCu -3'
miRNA:   3'- gagUCUCUCGG----UUGUCGUCCuCa-AGc -5'
13979 3' -53 NC_003521.1 + 125292 0.66 0.986056
Target:  5'- gUCAGGcGAGCCGcgucguucgcggacGCGGCGGuGGGUcCGg -3'
miRNA:   3'- gAGUCU-CUCGGU--------------UGUCGUC-CUCAaGC- -5'
13979 3' -53 NC_003521.1 + 214155 0.67 0.984862
Target:  5'- -gCAGGGAGCCGcggAUGGCuuggucgacGGGcAGUUCGg -3'
miRNA:   3'- gaGUCUCUCGGU---UGUCG---------UCC-UCAAGC- -5'
13979 3' -53 NC_003521.1 + 169673 0.67 0.984862
Target:  5'- -gCAGAgGAGgCAACAGCagAGGAGgaggCGg -3'
miRNA:   3'- gaGUCU-CUCgGUUGUCG--UCCUCaa--GC- -5'
13979 3' -53 NC_003521.1 + 187887 0.67 0.984862
Target:  5'- cCUCGGGcGGCacgGGCGGCGGGGGcaggUCGa -3'
miRNA:   3'- -GAGUCUcUCGg--UUGUCGUCCUCa---AGC- -5'
13979 3' -53 NC_003521.1 + 193173 0.67 0.981021
Target:  5'- uCUCAG-GAGCC---GGCGGGAGcggCGg -3'
miRNA:   3'- -GAGUCuCUCGGuugUCGUCCUCaa-GC- -5'
13979 3' -53 NC_003521.1 + 20635 0.67 0.981021
Target:  5'- gCUCGGAGAGCCG-CGcGCuGGuGggCGc -3'
miRNA:   3'- -GAGUCUCUCGGUuGU-CGuCCuCaaGC- -5'
13979 3' -53 NC_003521.1 + 21955 0.67 0.976494
Target:  5'- -gCAGuGGGCgAgcGCGGCGGGAcucGUUCGg -3'
miRNA:   3'- gaGUCuCUCGgU--UGUCGUCCU---CAAGC- -5'
13979 3' -53 NC_003521.1 + 52663 0.68 0.973955
Target:  5'- uUCAGAGAGCggCAGCAGCGgcaccGGcAGcgUCGg -3'
miRNA:   3'- gAGUCUCUCG--GUUGUCGU-----CC-UCa-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.