miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 240623 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5'
13979 5' -61.4 NC_003521.1 + 226617 0.7 0.547481
Target:  5'- cGUCagGGGCUCGCCgcaGCacaccagcuUGCUCGCGGCc -3'
miRNA:   3'- -CAG--CUCGAGCGGa--CG---------GCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 225778 0.68 0.681591
Target:  5'- cUCGcGCUCGC--GCCGCUCGuCAGgGu -3'
miRNA:   3'- cAGCuCGAGCGgaCGGCGAGC-GUCgC- -5'
13979 5' -61.4 NC_003521.1 + 224316 0.71 0.492138
Target:  5'- -cCGAGCcgagCGCCgcaGCCcguGCUCGUAGCGu -3'
miRNA:   3'- caGCUCGa---GCGGa--CGG---CGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 216320 0.68 0.65281
Target:  5'- uGUCGGGaaaGag-GCCGCUCGUAGCGc -3'
miRNA:   3'- -CAGCUCgagCggaCGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 211703 0.66 0.765162
Target:  5'- --aGGGCcuccaGCUUGCCGC-CGUGGCGg -3'
miRNA:   3'- cagCUCGag---CGGACGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 211058 0.69 0.5759
Target:  5'- -cUGAcCUCGUUcGUCGCUCGCGGCGa -3'
miRNA:   3'- caGCUcGAGCGGaCGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 208660 0.67 0.737972
Target:  5'- uUCGAuggaacaacGCgggCGCCUuccGCCGCUUGguGCa -3'
miRNA:   3'- cAGCU---------CGa--GCGGA---CGGCGAGCguCGc -5'
13979 5' -61.4 NC_003521.1 + 206354 0.66 0.757095
Target:  5'- -gCGAGCUgcugGCCUGCgGCgacgacccccaggccCGCAGCGc -3'
miRNA:   3'- caGCUCGAg---CGGACGgCGa--------------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 205927 0.67 0.710046
Target:  5'- uUCGAGggCGCCUGCgucuCGCugggcuggcccUCGCAGUGc -3'
miRNA:   3'- cAGCUCgaGCGGACG----GCG-----------AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 205171 1.07 0.00196
Target:  5'- aGUCGAGCUCGCCUGCCGCUCGCAGCGc -3'
miRNA:   3'- -CAGCUCGAGCGGACGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 204019 0.66 0.774026
Target:  5'- -cCGAGUcCGCCguccgcgaGCgGCUCcGCAGCGc -3'
miRNA:   3'- caGCUCGaGCGGa-------CGgCGAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 202534 0.66 0.791408
Target:  5'- -aCGAGCUCucgcaCCUGCUGCgCGcCGGCc -3'
miRNA:   3'- caGCUCGAGc----GGACGGCGaGC-GUCGc -5'
13979 5' -61.4 NC_003521.1 + 202300 0.66 0.791408
Target:  5'- uGUCGAGCUcCGCCggcccgacuucUGCUGCUggaacugcugcCGguGCu -3'
miRNA:   3'- -CAGCUCGA-GCGG-----------ACGGCGA-----------GCguCGc -5'
13979 5' -61.4 NC_003521.1 + 201673 0.71 0.46544
Target:  5'- -gCGAGCUgCGCC-GCCGgUgGCAGCa -3'
miRNA:   3'- caGCUCGA-GCGGaCGGCgAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 198821 0.67 0.694923
Target:  5'- uGUCGuGC-CGCCguguUGCUGCUgcgaccuuaagaaggCGCGGCGg -3'
miRNA:   3'- -CAGCuCGaGCGG----ACGGCGA---------------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 198756 0.71 0.492138
Target:  5'- -cCGuGCUCGCUggucgcGCCGCUCGUGGgCGa -3'
miRNA:   3'- caGCuCGAGCGGa-----CGGCGAGCGUC-GC- -5'
13979 5' -61.4 NC_003521.1 + 197870 0.72 0.431058
Target:  5'- gGUCGcGCUCGCUggGCUGCagGCGGCa -3'
miRNA:   3'- -CAGCuCGAGCGGa-CGGCGagCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 196288 0.68 0.672024
Target:  5'- -gUGAGCgcgUGCCggGCCGCUugaugcuggccaUGCAGCGc -3'
miRNA:   3'- caGCUCGa--GCGGa-CGGCGA------------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 193158 0.67 0.709105
Target:  5'- -gCGGGggCGUCUGCUGCUgcuguugCGCAGCu -3'
miRNA:   3'- caGCUCgaGCGGACGGCGA-------GCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.