miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13982 5' -53.9 NC_003521.1 + 208014 0.66 0.988315
Target:  5'- -aCGUcuuuucGGACCGCCGuaugcUGGA-GGGCGCGg -3'
miRNA:   3'- caGCA------UCUGGUGGU-----ACCUgCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 69425 0.66 0.988315
Target:  5'- -aCGgcGcgcACCACCAcGGugGAGuCGCAg -3'
miRNA:   3'- caGCauC---UGGUGGUaCCugCUC-GUGU- -5'
13982 5' -53.9 NC_003521.1 + 155638 0.66 0.988315
Target:  5'- uGUCGUAcGCgACCGagcaagGGACGGGCGa- -3'
miRNA:   3'- -CAGCAUcUGgUGGUa-----CCUGCUCGUgu -5'
13982 5' -53.9 NC_003521.1 + 86018 0.66 0.988315
Target:  5'- aGUCGU-GACCGCCca--ACGAGCugAc -3'
miRNA:   3'- -CAGCAuCUGGUGGuaccUGCUCGugU- -5'
13982 5' -53.9 NC_003521.1 + 29567 0.66 0.988315
Target:  5'- -----cGACaCACCccGGugGAGCACGu -3'
miRNA:   3'- cagcauCUG-GUGGuaCCugCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 204085 0.66 0.986819
Target:  5'- cGUCGUGGGCCACgugCAccUGGugGcGC-CAc -3'
miRNA:   3'- -CAGCAUCUGGUG---GU--ACCugCuCGuGU- -5'
13982 5' -53.9 NC_003521.1 + 102798 0.66 0.986819
Target:  5'- -cCGgcGGCCGCCAgcucGGGCG-GCAgCAa -3'
miRNA:   3'- caGCauCUGGUGGUa---CCUGCuCGU-GU- -5'
13982 5' -53.9 NC_003521.1 + 53087 0.66 0.986819
Target:  5'- -gCGcAGGCCAuucgagacgaauCCGUGGAagccCGAGCGCGa -3'
miRNA:   3'- caGCaUCUGGU------------GGUACCU----GCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 113637 0.66 0.986819
Target:  5'- -gCGUcaACC-CCGUGGcCGAGUACAu -3'
miRNA:   3'- caGCAucUGGuGGUACCuGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 88234 0.66 0.985853
Target:  5'- -cCGaggAGGCCAUCGUguacuccaacuacacGGugGAGCGCGu -3'
miRNA:   3'- caGCa--UCUGGUGGUA---------------CCugCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 54344 0.66 0.985179
Target:  5'- cUCGcccUGGGCCACUcgGGGCGuGGCGa- -3'
miRNA:   3'- cAGC---AUCUGGUGGuaCCUGC-UCGUgu -5'
13982 5' -53.9 NC_003521.1 + 128260 0.66 0.985179
Target:  5'- --gGUAGGCCGugGUGGGC-AGCGCGu -3'
miRNA:   3'- cagCAUCUGGUggUACCUGcUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 171396 0.66 0.985179
Target:  5'- -gCGacu-CCACCGUGGugGuGCGCGc -3'
miRNA:   3'- caGCaucuGGUGGUACCugCuCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 40825 0.66 0.983389
Target:  5'- cUCGgggcgGGGCCcgcGCCAUGGACaccuugcuGCACAa -3'
miRNA:   3'- cAGCa----UCUGG---UGGUACCUGcu------CGUGU- -5'
13982 5' -53.9 NC_003521.1 + 125200 0.66 0.983389
Target:  5'- cUCcauGGCCGCCAUGGugGcGGCgGCAa -3'
miRNA:   3'- cAGcauCUGGUGGUACCugC-UCG-UGU- -5'
13982 5' -53.9 NC_003521.1 + 76177 0.66 0.983389
Target:  5'- cGUCGcGGGCCugCGUGaGGCGc-CACAg -3'
miRNA:   3'- -CAGCaUCUGGugGUAC-CUGCucGUGU- -5'
13982 5' -53.9 NC_003521.1 + 86193 0.66 0.983389
Target:  5'- cUCGcGGGCCACgGUGGAgGcgaagggcggcGGCACGc -3'
miRNA:   3'- cAGCaUCUGGUGgUACCUgC-----------UCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 137794 0.66 0.983389
Target:  5'- cUC-UGGAUagACCGggcGGACGAGCGCAg -3'
miRNA:   3'- cAGcAUCUGg-UGGUa--CCUGCUCGUGU- -5'
13982 5' -53.9 NC_003521.1 + 144114 0.66 0.981439
Target:  5'- -cUGcUGGACCGCCGcggccUGGACGAgGUGCGc -3'
miRNA:   3'- caGC-AUCUGGUGGU-----ACCUGCU-CGUGU- -5'
13982 5' -53.9 NC_003521.1 + 113783 0.66 0.981439
Target:  5'- -aCGgcGACgGCCAgcgcGACGGGCACc -3'
miRNA:   3'- caGCauCUGgUGGUac--CUGCUCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.