miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13984 3' -58.8 NC_003521.1 + 107817 0.66 0.880561
Target:  5'- cCGGUGGCGGCUguccccguCC-CAACCCCgGUc -3'
miRNA:   3'- -GUCGCUGCCGGu-------GGuGUUGGGGaCAu -5'
13984 3' -58.8 NC_003521.1 + 55917 0.66 0.880561
Target:  5'- aCGGCGGCGGCaacggggguGCCAgCGggguaugagGCCUCUGUGg -3'
miRNA:   3'- -GUCGCUGCCGg--------UGGU-GU---------UGGGGACAU- -5'
13984 3' -58.8 NC_003521.1 + 124058 0.66 0.880561
Target:  5'- gCGGCGGCGGCCcacGCUGCAcagaGCCaCgUGUu -3'
miRNA:   3'- -GUCGCUGCCGG---UGGUGU----UGG-GgACAu -5'
13984 3' -58.8 NC_003521.1 + 129233 0.66 0.880561
Target:  5'- cCGGCGccGCuGGCCACgCGCGGCaCCUGg- -3'
miRNA:   3'- -GUCGC--UG-CCGGUG-GUGUUGgGGACau -5'
13984 3' -58.8 NC_003521.1 + 137044 0.66 0.880561
Target:  5'- cCGGCGGCugaccucaGGCacCGCC-CGGCCCCUGc- -3'
miRNA:   3'- -GUCGCUG--------CCG--GUGGuGUUGGGGACau -5'
13984 3' -58.8 NC_003521.1 + 68042 0.66 0.880561
Target:  5'- gCGGCGugGuCCGCgGCGcCCCCgGUGg -3'
miRNA:   3'- -GUCGCugCcGGUGgUGUuGGGGaCAU- -5'
13984 3' -58.8 NC_003521.1 + 152429 0.66 0.880561
Target:  5'- gAGCG-CGGCCuCUACGugCCCg--- -3'
miRNA:   3'- gUCGCuGCCGGuGGUGUugGGGacau -5'
13984 3' -58.8 NC_003521.1 + 164637 0.66 0.880561
Target:  5'- -cGCGACcGCCuCC-CGACCCgUGUGu -3'
miRNA:   3'- guCGCUGcCGGuGGuGUUGGGgACAU- -5'
13984 3' -58.8 NC_003521.1 + 90538 0.66 0.873662
Target:  5'- -cGCGAUGGCC-CCGCGACagcaCCCa--- -3'
miRNA:   3'- guCGCUGCCGGuGGUGUUG----GGGacau -5'
13984 3' -58.8 NC_003521.1 + 123938 0.66 0.873662
Target:  5'- -cGcCGGCGcGCCGCCGCAGCCgCg--- -3'
miRNA:   3'- guC-GCUGC-CGGUGGUGUUGGgGacau -5'
13984 3' -58.8 NC_003521.1 + 209901 0.66 0.873662
Target:  5'- aCGGCGACGuGCC-CCAgGACCgCUc-- -3'
miRNA:   3'- -GUCGCUGC-CGGuGGUgUUGGgGAcau -5'
13984 3' -58.8 NC_003521.1 + 106723 0.66 0.873662
Target:  5'- gCAG-GACGGCCACCA--GgUCCUGg- -3'
miRNA:   3'- -GUCgCUGCCGGUGGUguUgGGGACau -5'
13984 3' -58.8 NC_003521.1 + 131319 0.66 0.872961
Target:  5'- gAGCaGCGGCCGgCGCGACCacucgcuggagcgCCUGg- -3'
miRNA:   3'- gUCGcUGCCGGUgGUGUUGG-------------GGACau -5'
13984 3' -58.8 NC_003521.1 + 112236 0.66 0.872961
Target:  5'- -cGUGACGGCCAUCGCcuACCacuccauCCUGg- -3'
miRNA:   3'- guCGCUGCCGGUGGUGu-UGG-------GGACau -5'
13984 3' -58.8 NC_003521.1 + 155247 0.66 0.872259
Target:  5'- -cGUG-CGGCCccccaguuccauCCGCAACCCCUcGUAc -3'
miRNA:   3'- guCGCuGCCGGu-----------GGUGUUGGGGA-CAU- -5'
13984 3' -58.8 NC_003521.1 + 133779 0.66 0.871554
Target:  5'- -cGCGGCGGaguuuuuccuCCACCGCAagacuaugaaggugGCCgCCUGUc -3'
miRNA:   3'- guCGCUGCC----------GGUGGUGU--------------UGG-GGACAu -5'
13984 3' -58.8 NC_003521.1 + 137307 0.66 0.866564
Target:  5'- uGGCG-CGGCUGCUgcgcgGCGACCCCg--- -3'
miRNA:   3'- gUCGCuGCCGGUGG-----UGUUGGGGacau -5'
13984 3' -58.8 NC_003521.1 + 29899 0.66 0.866564
Target:  5'- gGGCGACGaCgACCgACGACCCgUGg- -3'
miRNA:   3'- gUCGCUGCcGgUGG-UGUUGGGgACau -5'
13984 3' -58.8 NC_003521.1 + 111814 0.66 0.866564
Target:  5'- gAGCG-CGGCCugauCCACAGCUUCUu-- -3'
miRNA:   3'- gUCGCuGCCGGu---GGUGUUGGGGAcau -5'
13984 3' -58.8 NC_003521.1 + 124616 0.66 0.866564
Target:  5'- aAGCGGCGGCgACgGCGACgucuCCCUc-- -3'
miRNA:   3'- gUCGCUGCCGgUGgUGUUG----GGGAcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.