miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 3' -67.9 NC_003521.1 + 13853 0.66 0.527707
Target:  5'- --gCUCGGCGCgGGGguCUCuGCgGGCGg -3'
miRNA:   3'- cggGAGCCGCGgCCC--GAGcCGgCCGU- -5'
13987 3' -67.9 NC_003521.1 + 103655 0.66 0.527707
Target:  5'- aGCUCggcggCGGcCGCUGcGGCcgCGGCCauGGCGg -3'
miRNA:   3'- -CGGGa----GCC-GCGGC-CCGa-GCCGG--CCGU- -5'
13987 3' -67.9 NC_003521.1 + 73164 0.66 0.527707
Target:  5'- -gCCUCGGCcuGCgaccuggacgCGGaGCU-GGCCGGCAu -3'
miRNA:   3'- cgGGAGCCG--CG----------GCC-CGAgCCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 237164 0.66 0.527707
Target:  5'- gGUCC-CGGcCGCCGaGGCagacggcggCGGCCguGGCAc -3'
miRNA:   3'- -CGGGaGCC-GCGGC-CCGa--------GCCGG--CCGU- -5'
13987 3' -67.9 NC_003521.1 + 234363 0.66 0.527707
Target:  5'- uGCCCUgGucGUGCCGGuguuuCUCGGCCGuCAu -3'
miRNA:   3'- -CGGGAgC--CGCGGCCc----GAGCCGGCcGU- -5'
13987 3' -67.9 NC_003521.1 + 100196 0.66 0.527707
Target:  5'- gGCUCUCGGCcguguaccGCUGcaGGUcguaGGCCGGCGa -3'
miRNA:   3'- -CGGGAGCCG--------CGGC--CCGag--CCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 112981 0.66 0.526823
Target:  5'- uGCCCgacgggcUGGCGCCGGggcccuuccacgaGCUgCGcGCCuGGCAg -3'
miRNA:   3'- -CGGGa------GCCGCGGCC-------------CGA-GC-CGG-CCGU- -5'
13987 3' -67.9 NC_003521.1 + 176473 0.66 0.518899
Target:  5'- uGUCCagGGCGCCcaGGGCcugCaGCUGGCu -3'
miRNA:   3'- -CGGGagCCGCGG--CCCGa--GcCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 15504 0.66 0.518899
Target:  5'- cUCCUucucCGGCGCuCGGGUuggCGG-CGGCAu -3'
miRNA:   3'- cGGGA----GCCGCG-GCCCGa--GCCgGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 26282 0.66 0.518899
Target:  5'- aCCC-CGGUGCUGGuGCUgGGCaucuuggagGGCAc -3'
miRNA:   3'- cGGGaGCCGCGGCC-CGAgCCGg--------CCGU- -5'
13987 3' -67.9 NC_003521.1 + 128507 0.66 0.518899
Target:  5'- gGCCUgcgacagCGaGuCGCUGGGCaggugCGGCUGGCc -3'
miRNA:   3'- -CGGGa------GC-C-GCGGCCCGa----GCCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 99016 0.66 0.518899
Target:  5'- cGUCUUguagacgaUGGCGCC-GGCUCcgGGCCGGUc -3'
miRNA:   3'- -CGGGA--------GCCGCGGcCCGAG--CCGGCCGu -5'
13987 3' -67.9 NC_003521.1 + 127323 0.66 0.510151
Target:  5'- cGCUCUCGGUgacgGCCaugaGGGC-CaGGCCGGgAa -3'
miRNA:   3'- -CGGGAGCCG----CGG----CCCGaG-CCGGCCgU- -5'
13987 3' -67.9 NC_003521.1 + 117486 0.66 0.510151
Target:  5'- gGCCg-CGGCGCUGGGgccgucggugUUCGGaCGGCu -3'
miRNA:   3'- -CGGgaGCCGCGGCCC----------GAGCCgGCCGu -5'
13987 3' -67.9 NC_003521.1 + 172305 0.66 0.510151
Target:  5'- cGUCCggugucggUGGCGCCaGGC-CGGUcgCGGCGg -3'
miRNA:   3'- -CGGGa-------GCCGCGGcCCGaGCCG--GCCGU- -5'
13987 3' -67.9 NC_003521.1 + 17485 0.66 0.510151
Target:  5'- gGCaCCgguagCGGCGCCGccggucacGGCgguuccCGGCCcGGCGg -3'
miRNA:   3'- -CG-GGa----GCCGCGGC--------CCGa-----GCCGG-CCGU- -5'
13987 3' -67.9 NC_003521.1 + 108771 0.66 0.510151
Target:  5'- aCCCUaGGCGCUGaGGCgCGGCa-GCAg -3'
miRNA:   3'- cGGGAgCCGCGGC-CCGaGCCGgcCGU- -5'
13987 3' -67.9 NC_003521.1 + 234773 0.66 0.510151
Target:  5'- cGCCCUgCGGgGCCgcugGGGCaCGGCUuacucgucgGGCu -3'
miRNA:   3'- -CGGGA-GCCgCGG----CCCGaGCCGG---------CCGu -5'
13987 3' -67.9 NC_003521.1 + 209987 0.66 0.510151
Target:  5'- uGCCgUCgcaaGGCGCCcguggaguucgcGGGUUUcGCCGGCGg -3'
miRNA:   3'- -CGGgAG----CCGCGG------------CCCGAGcCGGCCGU- -5'
13987 3' -67.9 NC_003521.1 + 138008 0.66 0.501464
Target:  5'- -aUCUCGGCGUCGaGGUgcgcgugcgUCGcuGCCGGCGc -3'
miRNA:   3'- cgGGAGCCGCGGC-CCG---------AGC--CGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.