miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13987 5' -56.7 NC_003521.1 + 128742 0.66 0.950373
Target:  5'- aCUUGGCGCCCGAGCccgugguguagguggUgGGguuCUCCAGg- -3'
miRNA:   3'- -GAGCCGCGGGUUUG---------------AgCC---GAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 133037 0.66 0.948749
Target:  5'- aUCaGCaGCCCccACcacagUGGCUCCAGCAg -3'
miRNA:   3'- gAGcCG-CGGGuuUGa----GCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 102798 0.66 0.948749
Target:  5'- -cCGGCGgCCGccAGCUCGgGCggCAGCAa -3'
miRNA:   3'- gaGCCGCgGGU--UUGAGC-CGagGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 163760 0.66 0.948749
Target:  5'- -gCGGCGCUCAcGGCggCGGCaaCAACGg -3'
miRNA:   3'- gaGCCGCGGGU-UUGa-GCCGagGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 103459 0.66 0.948749
Target:  5'- uUC-GCGUCCGcggauGCgggagggCGGCUCCAGCGg -3'
miRNA:   3'- gAGcCGCGGGUu----UGa------GCCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 236550 0.66 0.948749
Target:  5'- uUCGGCGUCgCucg-UCGGCUCCGcCGu -3'
miRNA:   3'- gAGCCGCGG-GuuugAGCCGAGGUuGU- -5'
13987 5' -56.7 NC_003521.1 + 45890 0.66 0.948749
Target:  5'- -cCGGCGUCCaAGACgacgCGaGCaCCAGCAu -3'
miRNA:   3'- gaGCCGCGGG-UUUGa---GC-CGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 197328 0.66 0.948337
Target:  5'- gUCGGCcagGCCCuGGGCgaggucaUCGGCUCCuuCGu -3'
miRNA:   3'- gAGCCG---CGGG-UUUG-------AGCCGAGGuuGU- -5'
13987 5' -56.7 NC_003521.1 + 224550 0.66 0.944536
Target:  5'- -cCGGCGCCCAGca--GGaaCCAGCGg -3'
miRNA:   3'- gaGCCGCGGGUUugagCCgaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 234072 0.66 0.944536
Target:  5'- -aUGGaCGCCCuggGACUCGGCgagcgCUGGCu -3'
miRNA:   3'- gaGCC-GCGGGu--UUGAGCCGa----GGUUGu -5'
13987 5' -56.7 NC_003521.1 + 148429 0.66 0.944536
Target:  5'- --gGGCGgCCGcGCcggCGGCUCCAGgGg -3'
miRNA:   3'- gagCCGCgGGUuUGa--GCCGAGGUUgU- -5'
13987 5' -56.7 NC_003521.1 + 111807 0.66 0.944536
Target:  5'- --gGGUGCCCucuggCGGCgCCAGCGa -3'
miRNA:   3'- gagCCGCGGGuuugaGCCGaGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 74705 0.66 0.944536
Target:  5'- -gCGGCGCCgcGGCagCGGCUCCcuGCu -3'
miRNA:   3'- gaGCCGCGGguUUGa-GCCGAGGu-UGu -5'
13987 5' -56.7 NC_003521.1 + 150907 0.66 0.944536
Target:  5'- -aUGGCGCCUggGgaucgaacCUCGGCUCgguGCGg -3'
miRNA:   3'- gaGCCGCGGGuuU--------GAGCCGAGgu-UGU- -5'
13987 5' -56.7 NC_003521.1 + 6264 0.66 0.944536
Target:  5'- aCUCGGCGCCaccucucUUCGcGCUCUAGa- -3'
miRNA:   3'- -GAGCCGCGGguuu---GAGC-CGAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 207954 0.66 0.944536
Target:  5'- -gCGGCGCgggcgCCAAACcgaUCGGcCUCCAGa- -3'
miRNA:   3'- gaGCCGCG-----GGUUUG---AGCC-GAGGUUgu -5'
13987 5' -56.7 NC_003521.1 + 150749 0.66 0.944536
Target:  5'- -cCGGCuGCCCGGACU--GCUCCGcgaGCGc -3'
miRNA:   3'- gaGCCG-CGGGUUUGAgcCGAGGU---UGU- -5'
13987 5' -56.7 NC_003521.1 + 224746 0.66 0.940102
Target:  5'- --aGGCGgCCAGcGCgucggGGCUCCGGCAg -3'
miRNA:   3'- gagCCGCgGGUU-UGag---CCGAGGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 75549 0.66 0.940102
Target:  5'- -gCGGCGCC--GGCggCGGCUacgCCAGCGc -3'
miRNA:   3'- gaGCCGCGGguUUGa-GCCGA---GGUUGU- -5'
13987 5' -56.7 NC_003521.1 + 122581 0.66 0.940102
Target:  5'- -aCGGgGCUCGGuuuCUCGGUcgCCGGCGu -3'
miRNA:   3'- gaGCCgCGGGUUu--GAGCCGa-GGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.