miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13988 5' -54.4 NC_003521.1 + 60856 0.66 0.988968
Target:  5'- cGCAGGugUUCGcgcagcugGUGUGGugccgcaguuCUCGGAGa -3'
miRNA:   3'- -CGUCCugAGGC--------UACGCUu---------GAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 163893 0.66 0.988968
Target:  5'- gGCAGGug-CCGAcggUGCGuuACUCGGGu- -3'
miRNA:   3'- -CGUCCugaGGCU---ACGCu-UGAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 49069 0.66 0.988968
Target:  5'- aCAGGAC-CCGGUGgaccguCGGACg-GGGGGc -3'
miRNA:   3'- cGUCCUGaGGCUAC------GCUUGagCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 85830 0.66 0.988968
Target:  5'- cCAGGGCUUCGGucUGCG---UCGGGGa -3'
miRNA:   3'- cGUCCUGAGGCU--ACGCuugAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 106806 0.66 0.988968
Target:  5'- -uGGGAgagaaguuCUCC---GCGAACUCGGAGa -3'
miRNA:   3'- cgUCCU--------GAGGcuaCGCUUGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 147670 0.66 0.988968
Target:  5'- -aGGGACgUCGA-GCGAcgGC-CGGAGGu -3'
miRNA:   3'- cgUCCUGaGGCUaCGCU--UGaGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 162667 0.66 0.987566
Target:  5'- cGCAG-ACUCCGucGUGCGAAaguaUUGGAa- -3'
miRNA:   3'- -CGUCcUGAGGC--UACGCUUg---AGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 103490 0.66 0.987566
Target:  5'- aGCGGG-C-CCGcgugauagGUGAACUCGGGGu -3'
miRNA:   3'- -CGUCCuGaGGCua------CGCUUGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 144892 0.66 0.987566
Target:  5'- -gAGGGCUCUGAUcCG-GCUCGGGa- -3'
miRNA:   3'- cgUCCUGAGGCUAcGCuUGAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 95897 0.66 0.98712
Target:  5'- gGCGGGGaaugaucguCUCCGAUGCGggUUgugguuucccgagcCGGAu- -3'
miRNA:   3'- -CGUCCU---------GAGGCUACGCuuGA--------------GCCUcc -5'
13988 5' -54.4 NC_003521.1 + 102682 0.66 0.98712
Target:  5'- aGCAGGucgaaggggaacauGCUgCGGUGCcagguCUCGGAGa -3'
miRNA:   3'- -CGUCC--------------UGAgGCUACGcuu--GAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 205722 0.66 0.986662
Target:  5'- aCGGGGCucgggccgccucgaaUCCGGcaUGuCGAGCgccCGGAGGa -3'
miRNA:   3'- cGUCCUG---------------AGGCU--AC-GCUUGa--GCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 240650 0.66 0.986031
Target:  5'- uGCAGGGaggCCGAaGCGGcgGC-CGGAGc -3'
miRNA:   3'- -CGUCCUga-GGCUaCGCU--UGaGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 142705 0.66 0.986031
Target:  5'- --cGGACUCCGcgccGCGAGucCUCGGAc- -3'
miRNA:   3'- cguCCUGAGGCua--CGCUU--GAGCCUcc -5'
13988 5' -54.4 NC_003521.1 + 101 0.66 0.986031
Target:  5'- uGCAGGGaggCCGAaGCGGcgGC-CGGAGc -3'
miRNA:   3'- -CGUCCUga-GGCUaCGCU--UGaGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 40423 0.66 0.986031
Target:  5'- uGCAGGGaggCCGAaGCGGcgGC-CGGAGc -3'
miRNA:   3'- -CGUCCUga-GGCUaCGCU--UGaGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 191084 0.66 0.986031
Target:  5'- aGCGGGGCguaCGAcUGCcgcacGACUCGGGGc -3'
miRNA:   3'- -CGUCCUGag-GCU-ACGc----UUGAGCCUCc -5'
13988 5' -54.4 NC_003521.1 + 37207 0.66 0.984355
Target:  5'- cGgGGGAC-CgCGGUuagGCGGcCUCGGGGGu -3'
miRNA:   3'- -CgUCCUGaG-GCUA---CGCUuGAGCCUCC- -5'
13988 5' -54.4 NC_003521.1 + 57198 0.66 0.984179
Target:  5'- cGCAGGgagucaucgcacaACUCgGAgGCGuAGCUCaGAGGc -3'
miRNA:   3'- -CGUCC-------------UGAGgCUaCGC-UUGAGcCUCC- -5'
13988 5' -54.4 NC_003521.1 + 36412 0.66 0.98253
Target:  5'- cGCGGGGCgUgGAUuucGCGG--UCGGAGGg -3'
miRNA:   3'- -CGUCCUGaGgCUA---CGCUugAGCCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.