miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13989 3' -55.6 NC_003521.1 + 59733 0.66 0.972018
Target:  5'- aCA-CGCCG-GAUCUggccuucgGGCCGGAcCUGGu -3'
miRNA:   3'- -GUcGCGGCaCUAGGa-------CCGGUUU-GACC- -5'
13989 3' -55.6 NC_003521.1 + 240038 0.66 0.972018
Target:  5'- gGGCGCCGggcGGUCCUccGCCGA--UGGc -3'
miRNA:   3'- gUCGCGGCa--CUAGGAc-CGGUUugACC- -5'
13989 3' -55.6 NC_003521.1 + 39811 0.66 0.972018
Target:  5'- gGGCGCCGggcGGUCCUccGCCGA--UGGc -3'
miRNA:   3'- gUCGCGGCa--CUAGGAc-CGGUUugACC- -5'
13989 3' -55.6 NC_003521.1 + 224136 0.66 0.972018
Target:  5'- cCAG-GCCGUGggCCgagucgGGCCAGGuCaGGa -3'
miRNA:   3'- -GUCgCGGCACuaGGa-----CCGGUUU-GaCC- -5'
13989 3' -55.6 NC_003521.1 + 107343 0.66 0.971746
Target:  5'- gCGGCGCCagGUGAUCCUcgaccucGGgCGGACa-- -3'
miRNA:   3'- -GUCGCGG--CACUAGGA-------CCgGUUUGacc -5'
13989 3' -55.6 NC_003521.1 + 66391 0.66 0.971472
Target:  5'- cCAGCGCgugCGUGAaacgcugcaccgCCUGaGCCAgucgcucaccgAGCUGGa -3'
miRNA:   3'- -GUCGCG---GCACUa-----------GGAC-CGGU-----------UUGACC- -5'
13989 3' -55.6 NC_003521.1 + 142397 0.66 0.969212
Target:  5'- gAG-GCCGcGGcCCUGGCCGccCUGGc -3'
miRNA:   3'- gUCgCGGCaCUaGGACCGGUuuGACC- -5'
13989 3' -55.6 NC_003521.1 + 174508 0.66 0.969212
Target:  5'- gCAGgGCCGcGA---UGGCCGcGCUGGu -3'
miRNA:   3'- -GUCgCGGCaCUaggACCGGUuUGACC- -5'
13989 3' -55.6 NC_003521.1 + 81172 0.66 0.969212
Target:  5'- -uGCGCCGuUGGUCCacgcaccaGGCCucggcgauCUGGg -3'
miRNA:   3'- guCGCGGC-ACUAGGa-------CCGGuuu-----GACC- -5'
13989 3' -55.6 NC_003521.1 + 120003 0.66 0.969212
Target:  5'- -uGCGCCGcuggcuguaguUGAUCaggucGGCCuuGAGCUGGu -3'
miRNA:   3'- guCGCGGC-----------ACUAGga---CCGG--UUUGACC- -5'
13989 3' -55.6 NC_003521.1 + 27360 0.66 0.969212
Target:  5'- cCGGCGCCGUcaugacgugcGAcgCCUucaaGGCCcgucGCUGGg -3'
miRNA:   3'- -GUCGCGGCA----------CUa-GGA----CCGGuu--UGACC- -5'
13989 3' -55.6 NC_003521.1 + 123589 0.66 0.969212
Target:  5'- gCGGCGCCGgGAgccgCCgcGGCCGucAGCgGGu -3'
miRNA:   3'- -GUCGCGGCaCUa---GGa-CCGGU--UUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 50779 0.66 0.969212
Target:  5'- -cGCGCgGcGGUCCUGGUCGAucgGCgacGGu -3'
miRNA:   3'- guCGCGgCaCUAGGACCGGUU---UGa--CC- -5'
13989 3' -55.6 NC_003521.1 + 77715 0.66 0.969212
Target:  5'- aGGCgGCgGUGGUCgUGGC---GCUGGc -3'
miRNA:   3'- gUCG-CGgCACUAGgACCGguuUGACC- -5'
13989 3' -55.6 NC_003521.1 + 120036 0.66 0.969212
Target:  5'- gCAGCaacccgGCCGUGuucaCCUGGCCccAgUGGc -3'
miRNA:   3'- -GUCG------CGGCACua--GGACCGGuuUgACC- -5'
13989 3' -55.6 NC_003521.1 + 54657 0.66 0.968921
Target:  5'- -cGCGCaCGauGUCCUGGCCGugcacgcaggccgAGCUGa -3'
miRNA:   3'- guCGCG-GCacUAGGACCGGU-------------UUGACc -5'
13989 3' -55.6 NC_003521.1 + 84610 0.66 0.966211
Target:  5'- uCGGCGUCgGUGAcggccaggucgUCCUcGGCCAuGCaGGg -3'
miRNA:   3'- -GUCGCGG-CACU-----------AGGA-CCGGUuUGaCC- -5'
13989 3' -55.6 NC_003521.1 + 211365 0.66 0.966211
Target:  5'- gCAGCaGCCGgucgcgGAUCaugaaCUGGCCcacgcGCUGGu -3'
miRNA:   3'- -GUCG-CGGCa-----CUAG-----GACCGGuu---UGACC- -5'
13989 3' -55.6 NC_003521.1 + 124555 0.66 0.966211
Target:  5'- -uGCGCaCGUacgucacgaucaGGUCCgaGGCCAggUUGGc -3'
miRNA:   3'- guCGCG-GCA------------CUAGGa-CCGGUuuGACC- -5'
13989 3' -55.6 NC_003521.1 + 122941 0.66 0.966211
Target:  5'- cCAGCaCCGUGAUCUcGaGCCAcguGCgGGg -3'
miRNA:   3'- -GUCGcGGCACUAGGaC-CGGUu--UGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.