Results 1 - 20 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13989 | 3' | -55.6 | NC_003521.1 | + | 240038 | 0.66 | 0.972018 |
Target: 5'- gGGCGCCGggcGGUCCUccGCCGA--UGGc -3' miRNA: 3'- gUCGCGGCa--CUAGGAc-CGGUUugACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 39811 | 0.66 | 0.972018 |
Target: 5'- gGGCGCCGggcGGUCCUccGCCGA--UGGc -3' miRNA: 3'- gUCGCGGCa--CUAGGAc-CGGUUugACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 59733 | 0.66 | 0.972018 |
Target: 5'- aCA-CGCCG-GAUCUggccuucgGGCCGGAcCUGGu -3' miRNA: 3'- -GUcGCGGCaCUAGGa-------CCGGUUU-GACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 224136 | 0.66 | 0.972018 |
Target: 5'- cCAG-GCCGUGggCCgagucgGGCCAGGuCaGGa -3' miRNA: 3'- -GUCgCGGCACuaGGa-----CCGGUUU-GaCC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 107343 | 0.66 | 0.971746 |
Target: 5'- gCGGCGCCagGUGAUCCUcgaccucGGgCGGACa-- -3' miRNA: 3'- -GUCGCGG--CACUAGGA-------CCgGUUUGacc -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 66391 | 0.66 | 0.971472 |
Target: 5'- cCAGCGCgugCGUGAaacgcugcaccgCCUGaGCCAgucgcucaccgAGCUGGa -3' miRNA: 3'- -GUCGCG---GCACUa-----------GGAC-CGGU-----------UUGACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 120003 | 0.66 | 0.969212 |
Target: 5'- -uGCGCCGcuggcuguaguUGAUCaggucGGCCuuGAGCUGGu -3' miRNA: 3'- guCGCGGC-----------ACUAGga---CCGG--UUUGACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 81172 | 0.66 | 0.969212 |
Target: 5'- -uGCGCCGuUGGUCCacgcaccaGGCCucggcgauCUGGg -3' miRNA: 3'- guCGCGGC-ACUAGGa-------CCGGuuu-----GACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 174508 | 0.66 | 0.969212 |
Target: 5'- gCAGgGCCGcGA---UGGCCGcGCUGGu -3' miRNA: 3'- -GUCgCGGCaCUaggACCGGUuUGACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 142397 | 0.66 | 0.969212 |
Target: 5'- gAG-GCCGcGGcCCUGGCCGccCUGGc -3' miRNA: 3'- gUCgCGGCaCUaGGACCGGUuuGACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 77715 | 0.66 | 0.969212 |
Target: 5'- aGGCgGCgGUGGUCgUGGC---GCUGGc -3' miRNA: 3'- gUCG-CGgCACUAGgACCGguuUGACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 50779 | 0.66 | 0.969212 |
Target: 5'- -cGCGCgGcGGUCCUGGUCGAucgGCgacGGu -3' miRNA: 3'- guCGCGgCaCUAGGACCGGUU---UGa--CC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 27360 | 0.66 | 0.969212 |
Target: 5'- cCGGCGCCGUcaugacgugcGAcgCCUucaaGGCCcgucGCUGGg -3' miRNA: 3'- -GUCGCGGCA----------CUa-GGA----CCGGuu--UGACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 120036 | 0.66 | 0.969212 |
Target: 5'- gCAGCaacccgGCCGUGuucaCCUGGCCccAgUGGc -3' miRNA: 3'- -GUCG------CGGCACua--GGACCGGuuUgACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 123589 | 0.66 | 0.969212 |
Target: 5'- gCGGCGCCGgGAgccgCCgcGGCCGucAGCgGGu -3' miRNA: 3'- -GUCGCGGCaCUa---GGa-CCGGU--UUGaCC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 54657 | 0.66 | 0.968921 |
Target: 5'- -cGCGCaCGauGUCCUGGCCGugcacgcaggccgAGCUGa -3' miRNA: 3'- guCGCG-GCacUAGGACCGGU-------------UUGACc -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 14771 | 0.66 | 0.966211 |
Target: 5'- -cGCGCCu---UCgUGGCCGAgguGCUGGu -3' miRNA: 3'- guCGCGGcacuAGgACCGGUU---UGACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 211365 | 0.66 | 0.966211 |
Target: 5'- gCAGCaGCCGgucgcgGAUCaugaaCUGGCCcacgcGCUGGu -3' miRNA: 3'- -GUCG-CGGCa-----CUAG-----GACCGGuu---UGACC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 122941 | 0.66 | 0.966211 |
Target: 5'- cCAGCaCCGUGAUCUcGaGCCAcguGCgGGg -3' miRNA: 3'- -GUCGcGGCACUAGGaC-CGGUu--UGaCC- -5' |
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13989 | 3' | -55.6 | NC_003521.1 | + | 124555 | 0.66 | 0.966211 |
Target: 5'- -uGCGCaCGUacgucacgaucaGGUCCgaGGCCAggUUGGc -3' miRNA: 3'- guCGCG-GCA------------CUAGGa-CCGGUuuGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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