miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13990 5' -54.5 NC_003521.1 + 88217 0.66 0.981756
Target:  5'- aGGCUGCUgagcuUCUGGCUCauguaGCCGa- -3'
miRNA:   3'- -CCGGCGA-----AGACCGAGaaagaUGGCga -5'
13990 5' -54.5 NC_003521.1 + 117235 0.66 0.981756
Target:  5'- cGGCCGCggC-GGCUCccggcGCCGCc -3'
miRNA:   3'- -CCGGCGaaGaCCGAGaaagaUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 235331 0.66 0.981756
Target:  5'- -aCCGCcUCUGGUg-UUUCUGCCGg- -3'
miRNA:   3'- ccGGCGaAGACCGagAAAGAUGGCga -5'
13990 5' -54.5 NC_003521.1 + 104153 0.66 0.981555
Target:  5'- uGGCCcggcgccugugugGCUUCUuGCUCUgUCgccGCCGCc -3'
miRNA:   3'- -CCGG-------------CGAAGAcCGAGAaAGa--UGGCGa -5'
13990 5' -54.5 NC_003521.1 + 227760 0.66 0.979668
Target:  5'- cGCUGCUUCUGGUUCUcUUCc-UCGUc -3'
miRNA:   3'- cCGGCGAAGACCGAGA-AAGauGGCGa -5'
13990 5' -54.5 NC_003521.1 + 142266 0.66 0.977408
Target:  5'- cGGCCGacUCgGGCUCgggCUgggacccgccGCCGCUg -3'
miRNA:   3'- -CCGGCgaAGaCCGAGaaaGA----------UGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 114313 0.66 0.977408
Target:  5'- cGCCGCggacCUgGGCU---UCUGCCGCc -3'
miRNA:   3'- cCGGCGaa--GA-CCGAgaaAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 72984 0.66 0.977408
Target:  5'- cGGCCGCggggGGC-CUg---GCCGCUc -3'
miRNA:   3'- -CCGGCGaagaCCGaGAaagaUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 190451 0.66 0.977408
Target:  5'- gGGCCuGCUaaccuUCUGGUacCUgagCUACCGUUg -3'
miRNA:   3'- -CCGG-CGA-----AGACCGa-GAaa-GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 112773 0.66 0.977408
Target:  5'- cGGCgGCgcgUC-GGCcacUUCUACCGCg -3'
miRNA:   3'- -CCGgCGa--AGaCCGagaAAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 86768 0.66 0.977408
Target:  5'- cGGCUGCUgcacGGCUUUaugggcgcCUGCCGCg -3'
miRNA:   3'- -CCGGCGAaga-CCGAGAaa------GAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 119643 0.66 0.977408
Target:  5'- uGGCCGCg---GGCgUCcgUCU-CCGCUu -3'
miRNA:   3'- -CCGGCGaagaCCG-AGaaAGAuGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 129966 0.66 0.975965
Target:  5'- gGGCCGCU----GCUCUacgugcaccgucgCUGCCGCUg -3'
miRNA:   3'- -CCGGCGAagacCGAGAaa-----------GAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 100793 0.66 0.974967
Target:  5'- uGCCGCca-UGGCcuUCUgcggccgCUACCGCg -3'
miRNA:   3'- cCGGCGaagACCG--AGAaa-----GAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 99709 0.66 0.974967
Target:  5'- cGGCCGCUUCUgcaggucgcaGGCgucgUCgcgcacccaGCCGCUc -3'
miRNA:   3'- -CCGGCGAAGA----------CCGagaaAGa--------UGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 41154 0.66 0.97234
Target:  5'- cGCCGCgacuaCUGGCcuacgCgacUCUGCUGCUg -3'
miRNA:   3'- cCGGCGaa---GACCGa----Gaa-AGAUGGCGA- -5'
13990 5' -54.5 NC_003521.1 + 216403 0.66 0.97234
Target:  5'- cGGCCccuGCgccgUCUGGCUU--UCUAugcuCCGCg -3'
miRNA:   3'- -CCGG---CGa---AGACCGAGaaAGAU----GGCGa -5'
13990 5' -54.5 NC_003521.1 + 92411 0.66 0.97234
Target:  5'- cGGCCGCccgcaccaUGGCUCccUCgcacguggACCGCg -3'
miRNA:   3'- -CCGGCGaag-----ACCGAGaaAGa-------UGGCGa -5'
13990 5' -54.5 NC_003521.1 + 129940 0.66 0.97234
Target:  5'- uGGCCGagac-GGCgcagUUCUGCCGCg -3'
miRNA:   3'- -CCGGCgaagaCCGaga-AAGAUGGCGa -5'
13990 5' -54.5 NC_003521.1 + 181329 0.66 0.96952
Target:  5'- aGGgCGCcgUCUGGUUCUguagCUGCaGCg -3'
miRNA:   3'- -CCgGCGa-AGACCGAGAaa--GAUGgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.