miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13991 5' -57 NC_003521.1 + 118706 0.66 0.911012
Target:  5'- aGGGCAGGcucauggGCgagGGGC-GCGGCa-- -3'
miRNA:   3'- gCCCGUCCa------CGaa-CUCGuCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 46551 0.66 0.904956
Target:  5'- aGGGCcucgcgccGGGUGCUgaAGCGGUGGUUg- -3'
miRNA:   3'- gCCCG--------UCCACGAacUCGUCGUCGAaa -5'
13991 5' -57 NC_003521.1 + 221999 0.66 0.904956
Target:  5'- aGGGCAuGUGCggcgUGGGCGGgaAGCa-- -3'
miRNA:   3'- gCCCGUcCACGa---ACUCGUCg-UCGaaa -5'
13991 5' -57 NC_003521.1 + 88494 0.66 0.904956
Target:  5'- uGGGCGGGUa---GAGCGGCAcGCg-- -3'
miRNA:   3'- gCCCGUCCAcgaaCUCGUCGU-CGaaa -5'
13991 5' -57 NC_003521.1 + 46389 0.66 0.904337
Target:  5'- gGGGCgcgGGGUGCgugGGGCgcgcgggccaggaAGCGGCg-- -3'
miRNA:   3'- gCCCG---UCCACGaa-CUCG-------------UCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 155247 0.66 0.898668
Target:  5'- uGGuGguGGUGgg-GGGCGGCGGCg-- -3'
miRNA:   3'- gCC-CguCCACgaaCUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 114003 0.66 0.898668
Target:  5'- uGGGCgagcacgcgaAGGUGCUgGAGguGCGcGCg-- -3'
miRNA:   3'- gCCCG----------UCCACGAaCUCguCGU-CGaaa -5'
13991 5' -57 NC_003521.1 + 165633 0.66 0.898668
Target:  5'- aCGGugaaCAcGGUGU-UGAGCAGCAGCa-- -3'
miRNA:   3'- -GCCc---GU-CCACGaACUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 213168 0.66 0.898668
Target:  5'- aGGGCAGGUGCcaGAGguuGgGGCUc- -3'
miRNA:   3'- gCCCGUCCACGaaCUCgu-CgUCGAaa -5'
13991 5' -57 NC_003521.1 + 224880 0.66 0.898668
Target:  5'- uCGucCAGGUGCUUGGcGCAcaGCAGCa-- -3'
miRNA:   3'- -GCccGUCCACGAACU-CGU--CGUCGaaa -5'
13991 5' -57 NC_003521.1 + 165874 0.66 0.898668
Target:  5'- gCGGuGCAcGUGCUcGGGCGGCGGgUa- -3'
miRNA:   3'- -GCC-CGUcCACGAaCUCGUCGUCgAaa -5'
13991 5' -57 NC_003521.1 + 217395 0.66 0.898668
Target:  5'- uGGGCAccgccagGC-UGAGCGGCGGCa-- -3'
miRNA:   3'- gCCCGUcca----CGaACUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 198781 0.66 0.898668
Target:  5'- uGGGCgAGGUG----GGUAGCAGCUg- -3'
miRNA:   3'- gCCCG-UCCACgaacUCGUCGUCGAaa -5'
13991 5' -57 NC_003521.1 + 197256 0.66 0.892153
Target:  5'- aGGaGC-GGUGCUUGAcGCGGCgccGGCg-- -3'
miRNA:   3'- gCC-CGuCCACGAACU-CGUCG---UCGaaa -5'
13991 5' -57 NC_003521.1 + 104140 0.66 0.892153
Target:  5'- uCGGGCccgcccugcucGGUGCUcUGcGGCGGCGGCg-- -3'
miRNA:   3'- -GCCCGu----------CCACGA-AC-UCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 92112 0.66 0.892153
Target:  5'- cCGGGUcggaacccccGGGUGCgguucGGGCGGCggGGCUUc -3'
miRNA:   3'- -GCCCG----------UCCACGaa---CUCGUCG--UCGAAa -5'
13991 5' -57 NC_003521.1 + 43231 0.66 0.885414
Target:  5'- cCGGGCAGcGgggaaggGC--GAGUAGCAGCg-- -3'
miRNA:   3'- -GCCCGUC-Ca------CGaaCUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 69741 0.66 0.885414
Target:  5'- gCGGGCGGGgagGC---GGCGGUGGCa-- -3'
miRNA:   3'- -GCCCGUCCa--CGaacUCGUCGUCGaaa -5'
13991 5' -57 NC_003521.1 + 101912 0.66 0.885414
Target:  5'- aGGGCAGGcGCaccGAGCGGCcGUg-- -3'
miRNA:   3'- gCCCGUCCaCGaa-CUCGUCGuCGaaa -5'
13991 5' -57 NC_003521.1 + 219067 0.67 0.878454
Target:  5'- aCGGcGCccAGGUGCaUGAGCAGCgagaccuguucgGGCa-- -3'
miRNA:   3'- -GCC-CG--UCCACGaACUCGUCG------------UCGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.