miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13992 5' -54.2 NC_003521.1 + 152301 0.66 0.988652
Target:  5'- -----cGGA---UCAUCAGGGACUCCa -3'
miRNA:   3'- ccuagaCCUucaGGUGGUCCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 150205 0.66 0.988652
Target:  5'- cGGGccuUCUGGcAGGUCCACagccugcuGGGcuacauCUCCg -3'
miRNA:   3'- -CCU---AGACC-UUCAGGUGgu------CCCu-----GAGG- -5'
13992 5' -54.2 NC_003521.1 + 195583 0.66 0.988652
Target:  5'- gGGGUCaGGcccGUCUGCCGGGcGGC-CCu -3'
miRNA:   3'- -CCUAGaCCuu-CAGGUGGUCC-CUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 130096 0.66 0.988652
Target:  5'- cGcgCUGGuc-UCCACCcGGGACcugCCg -3'
miRNA:   3'- cCuaGACCuucAGGUGGuCCCUGa--GG- -5'
13992 5' -54.2 NC_003521.1 + 33829 0.66 0.988652
Target:  5'- -cGUCUGcGAAGgacCCGCCuGGGGCgUCa -3'
miRNA:   3'- ccUAGAC-CUUCa--GGUGGuCCCUG-AGg -5'
13992 5' -54.2 NC_003521.1 + 148119 0.66 0.988652
Target:  5'- uGGAUcCUGGGAccucaucguGUC--CCAGGGAC-CCg -3'
miRNA:   3'- -CCUA-GACCUU---------CAGguGGUCCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 126664 0.66 0.988514
Target:  5'- cGGGUCcgaguagaagcggUGGAAGggcaCCGCCAGGcaguACUCg -3'
miRNA:   3'- -CCUAG-------------ACCUUCa---GGUGGUCCc---UGAGg -5'
13992 5' -54.2 NC_003521.1 + 100846 0.66 0.987211
Target:  5'- aGGGUCggUGaGAGGcUCCgGCCGGGacuGCUCCa -3'
miRNA:   3'- -CCUAG--AC-CUUC-AGG-UGGUCCc--UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 78890 0.66 0.986597
Target:  5'- -cGUCaGGggGUCCACgcgggccucguagaCGGGGaagccgcGCUCCa -3'
miRNA:   3'- ccUAGaCCuuCAGGUG--------------GUCCC-------UGAGG- -5'
13992 5' -54.2 NC_003521.1 + 148764 0.66 0.985634
Target:  5'- uGGAUCUGGGugcccucggcGGUCgCGCCGaGGAg-CCg -3'
miRNA:   3'- -CCUAGACCU----------UCAG-GUGGUcCCUgaGG- -5'
13992 5' -54.2 NC_003521.1 + 195091 0.66 0.983912
Target:  5'- aGGGUCUcGGccAGUCCGUCGcGGGGgUCCu -3'
miRNA:   3'- -CCUAGA-CCu-UCAGGUGGU-CCCUgAGG- -5'
13992 5' -54.2 NC_003521.1 + 22261 0.66 0.983912
Target:  5'- aGGAUgCUGGucggGGUCUACCAcGGcCUCg -3'
miRNA:   3'- -CCUA-GACCu---UCAGGUGGUcCCuGAGg -5'
13992 5' -54.2 NC_003521.1 + 150696 0.66 0.982037
Target:  5'- cGGG-CUGGGA-UCCGCCcacuaGGGGGCguaCCu -3'
miRNA:   3'- -CCUaGACCUUcAGGUGG-----UCCCUGa--GG- -5'
13992 5' -54.2 NC_003521.1 + 206016 0.66 0.982037
Target:  5'- cGAUCUGGAAcaCUGCCAGaauGACUUCu -3'
miRNA:   3'- cCUAGACCUUcaGGUGGUCc--CUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 211593 0.66 0.982037
Target:  5'- ---gCUGGAGGcCCAgUAGaGGAuCUCCa -3'
miRNA:   3'- ccuaGACCUUCaGGUgGUC-CCU-GAGG- -5'
13992 5' -54.2 NC_003521.1 + 100117 0.66 0.982037
Target:  5'- aGGAUgcgaccccgcggCUGGcGGUCCugCGggaaggccguGGGGCUCUu -3'
miRNA:   3'- -CCUA------------GACCuUCAGGugGU----------CCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 235138 0.66 0.982037
Target:  5'- gGGA--UGGugaucgCCACCAcGGACUCCg -3'
miRNA:   3'- -CCUagACCuuca--GGUGGUcCCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 103610 0.66 0.981841
Target:  5'- gGGAUCUgaaagaaGGgcGUCCcgGCCGccGACUCCa -3'
miRNA:   3'- -CCUAGA-------CCuuCAGG--UGGUccCUGAGG- -5'
13992 5' -54.2 NC_003521.1 + 157591 0.67 0.97543
Target:  5'- cGAUCUGGucAAGUgCGCCGaGGGCaCCg -3'
miRNA:   3'- cCUAGACC--UUCAgGUGGUcCCUGaGG- -5'
13992 5' -54.2 NC_003521.1 + 13547 0.67 0.975182
Target:  5'- uGAcCUGGGAGgucgucaUCCACUuGGGAauCUCCg -3'
miRNA:   3'- cCUaGACCUUC-------AGGUGGuCCCU--GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.