Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13992 | 5' | -54.2 | NC_003521.1 | + | 152301 | 0.66 | 0.988652 |
Target: 5'- -----cGGA---UCAUCAGGGACUCCa -3' miRNA: 3'- ccuagaCCUucaGGUGGUCCCUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 150205 | 0.66 | 0.988652 |
Target: 5'- cGGGccuUCUGGcAGGUCCACagccugcuGGGcuacauCUCCg -3' miRNA: 3'- -CCU---AGACC-UUCAGGUGgu------CCCu-----GAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 195583 | 0.66 | 0.988652 |
Target: 5'- gGGGUCaGGcccGUCUGCCGGGcGGC-CCu -3' miRNA: 3'- -CCUAGaCCuu-CAGGUGGUCC-CUGaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 130096 | 0.66 | 0.988652 |
Target: 5'- cGcgCUGGuc-UCCACCcGGGACcugCCg -3' miRNA: 3'- cCuaGACCuucAGGUGGuCCCUGa--GG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 33829 | 0.66 | 0.988652 |
Target: 5'- -cGUCUGcGAAGgacCCGCCuGGGGCgUCa -3' miRNA: 3'- ccUAGAC-CUUCa--GGUGGuCCCUG-AGg -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 148119 | 0.66 | 0.988652 |
Target: 5'- uGGAUcCUGGGAccucaucguGUC--CCAGGGAC-CCg -3' miRNA: 3'- -CCUA-GACCUU---------CAGguGGUCCCUGaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 126664 | 0.66 | 0.988514 |
Target: 5'- cGGGUCcgaguagaagcggUGGAAGggcaCCGCCAGGcaguACUCg -3' miRNA: 3'- -CCUAG-------------ACCUUCa---GGUGGUCCc---UGAGg -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 100846 | 0.66 | 0.987211 |
Target: 5'- aGGGUCggUGaGAGGcUCCgGCCGGGacuGCUCCa -3' miRNA: 3'- -CCUAG--AC-CUUC-AGG-UGGUCCc--UGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 78890 | 0.66 | 0.986597 |
Target: 5'- -cGUCaGGggGUCCACgcgggccucguagaCGGGGaagccgcGCUCCa -3' miRNA: 3'- ccUAGaCCuuCAGGUG--------------GUCCC-------UGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 148764 | 0.66 | 0.985634 |
Target: 5'- uGGAUCUGGGugcccucggcGGUCgCGCCGaGGAg-CCg -3' miRNA: 3'- -CCUAGACCU----------UCAG-GUGGUcCCUgaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 195091 | 0.66 | 0.983912 |
Target: 5'- aGGGUCUcGGccAGUCCGUCGcGGGGgUCCu -3' miRNA: 3'- -CCUAGA-CCu-UCAGGUGGU-CCCUgAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 22261 | 0.66 | 0.983912 |
Target: 5'- aGGAUgCUGGucggGGUCUACCAcGGcCUCg -3' miRNA: 3'- -CCUA-GACCu---UCAGGUGGUcCCuGAGg -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 150696 | 0.66 | 0.982037 |
Target: 5'- cGGG-CUGGGA-UCCGCCcacuaGGGGGCguaCCu -3' miRNA: 3'- -CCUaGACCUUcAGGUGG-----UCCCUGa--GG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 206016 | 0.66 | 0.982037 |
Target: 5'- cGAUCUGGAAcaCUGCCAGaauGACUUCu -3' miRNA: 3'- cCUAGACCUUcaGGUGGUCc--CUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 211593 | 0.66 | 0.982037 |
Target: 5'- ---gCUGGAGGcCCAgUAGaGGAuCUCCa -3' miRNA: 3'- ccuaGACCUUCaGGUgGUC-CCU-GAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 100117 | 0.66 | 0.982037 |
Target: 5'- aGGAUgcgaccccgcggCUGGcGGUCCugCGggaaggccguGGGGCUCUu -3' miRNA: 3'- -CCUA------------GACCuUCAGGugGU----------CCCUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 235138 | 0.66 | 0.982037 |
Target: 5'- gGGA--UGGugaucgCCACCAcGGACUCCg -3' miRNA: 3'- -CCUagACCuuca--GGUGGUcCCUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 103610 | 0.66 | 0.981841 |
Target: 5'- gGGAUCUgaaagaaGGgcGUCCcgGCCGccGACUCCa -3' miRNA: 3'- -CCUAGA-------CCuuCAGG--UGGUccCUGAGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 157591 | 0.67 | 0.97543 |
Target: 5'- cGAUCUGGucAAGUgCGCCGaGGGCaCCg -3' miRNA: 3'- cCUAGACC--UUCAgGUGGUcCCUGaGG- -5' |
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13992 | 5' | -54.2 | NC_003521.1 | + | 13547 | 0.67 | 0.975182 |
Target: 5'- uGAcCUGGGAGgucgucaUCCACUuGGGAauCUCCg -3' miRNA: 3'- cCUaGACCUUC-------AGGUGGuCCCU--GAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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