miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 3' -56.7 NC_003521.1 + 82892 0.65 0.937161
Target:  5'- gCACCCGCuguuGGCGCGUCgccacucucauccgGUCUGgacaAGUg -3'
miRNA:   3'- -GUGGGUGu---CCGCGUAG--------------UAGACg---UCGa -5'
13993 3' -56.7 NC_003521.1 + 161143 0.66 0.935724
Target:  5'- gCGgCCGCGGGCGgucgcggaCGUCGUucgcaacagucgccgCUGCAGCa -3'
miRNA:   3'- -GUgGGUGUCCGC--------GUAGUA---------------GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 84913 0.66 0.933777
Target:  5'- gCGCCCgguccaGCAGGgcCGUAUCcUCgUGCAGCg -3'
miRNA:   3'- -GUGGG------UGUCC--GCGUAGuAG-ACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 210498 0.66 0.933777
Target:  5'- gACUCGCuGGCGCAguugCUGgAGCg -3'
miRNA:   3'- gUGGGUGuCCGCGUaguaGACgUCGa -5'
13993 3' -56.7 NC_003521.1 + 208139 0.66 0.933777
Target:  5'- aGCCC-CGuGGCGCcUCgAUCcgGCAGCUc -3'
miRNA:   3'- gUGGGuGU-CCGCGuAG-UAGa-CGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 118916 0.66 0.933777
Target:  5'- -cCCCACGGGC-CGggcCAUCUGCcccAGCc -3'
miRNA:   3'- guGGGUGUCCGcGUa--GUAGACG---UCGa -5'
13993 3' -56.7 NC_003521.1 + 27532 0.66 0.932292
Target:  5'- gCGCCCACGguGGCGUagacggucuccaccGUCGUCcggGCGGUc -3'
miRNA:   3'- -GUGGGUGU--CCGCG--------------UAGUAGa--CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 142907 0.66 0.928747
Target:  5'- gCGCCaucaGCcGGCGaCGUCGgcgUUGCAGCa -3'
miRNA:   3'- -GUGGg---UGuCCGC-GUAGUa--GACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 153097 0.66 0.928747
Target:  5'- gGCCCACcacgccgccGGGCGCGcgCGaCgGCAGCa -3'
miRNA:   3'- gUGGGUG---------UCCGCGUa-GUaGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 114696 0.66 0.928747
Target:  5'- gGCCCuACGuGG-GUcgCGUCUGCAGUUa -3'
miRNA:   3'- gUGGG-UGU-CCgCGuaGUAGACGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 219688 0.66 0.928231
Target:  5'- gUACUCugGgaucucuGGCGgGUCGUCgGCAGCg -3'
miRNA:   3'- -GUGGGugU-------CCGCgUAGUAGaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 211337 0.66 0.923486
Target:  5'- -uCCCGCGGGCGCgaGUgGUUggggucccGCAGCa -3'
miRNA:   3'- guGGGUGUCCGCG--UAgUAGa-------CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 211388 0.66 0.923486
Target:  5'- gGCCguCAGGCGCcggcUC-UCgUGCAGCa -3'
miRNA:   3'- gUGGguGUCCGCGu---AGuAG-ACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 6165 0.66 0.917995
Target:  5'- aACCCcuggcggggcCAGGCGCAgaacgagacgAUCUGCGGCa -3'
miRNA:   3'- gUGGGu---------GUCCGCGUag--------UAGACGUCGa -5'
13993 3' -56.7 NC_003521.1 + 98988 0.66 0.917994
Target:  5'- gAgCCGUAGGCGCGUCGcaggaaCUGguGCUg -3'
miRNA:   3'- gUgGGUGUCCGCGUAGUa-----GACguCGA- -5'
13993 3' -56.7 NC_003521.1 + 180984 0.66 0.917994
Target:  5'- gGCCCAUAGuGCGUGUagaaguaguaCAUgaGCAGCa -3'
miRNA:   3'- gUGGGUGUC-CGCGUA----------GUAgaCGUCGa -5'
13993 3' -56.7 NC_003521.1 + 197598 0.66 0.917994
Target:  5'- gCGCCCAau-GUGCggCGUCUGguGCa -3'
miRNA:   3'- -GUGGGUgucCGCGuaGUAGACguCGa -5'
13993 3' -56.7 NC_003521.1 + 181659 0.66 0.917994
Target:  5'- uGCCCGC-GGCGCcgUG-CcGCAGCUg -3'
miRNA:   3'- gUGGGUGuCCGCGuaGUaGaCGUCGA- -5'
13993 3' -56.7 NC_003521.1 + 154646 0.66 0.917994
Target:  5'- gGCCCGCgagucgcuGGuGCGCAcCGUCUucgaGCAGCg -3'
miRNA:   3'- gUGGGUG--------UC-CGCGUaGUAGA----CGUCGa -5'
13993 3' -56.7 NC_003521.1 + 63355 0.66 0.912273
Target:  5'- -cUCCACGGccGCGCAgacCGUCaGCAGCUu -3'
miRNA:   3'- guGGGUGUC--CGCGUa--GUAGaCGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.