miRNA display CGI


Results 1 - 20 of 225 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13993 5' -58 NC_003521.1 + 239895 0.67 0.885046
Target:  5'- uCGGCUGguGGUGUuagccaugaacgcCGUGCGCcagauggugcccaUGGCUu -3'
miRNA:   3'- cGUCGACguCCACA-------------GCGCGCG-------------ACUGG- -5'
13993 5' -58 NC_003521.1 + 239258 0.72 0.613609
Target:  5'- aGCAGCgacgGCGGGUGUgGCGCcgagGCgaacGGCUc -3'
miRNA:   3'- -CGUCGa---CGUCCACAgCGCG----CGa---CUGG- -5'
13993 5' -58 NC_003521.1 + 239226 0.66 0.89286
Target:  5'- gGC-GCUGguGGaUGUgGCGCuGCacGGCCg -3'
miRNA:   3'- -CGuCGACguCC-ACAgCGCG-CGa-CUGG- -5'
13993 5' -58 NC_003521.1 + 237338 0.67 0.872772
Target:  5'- -aGGCcgGguGGUGU-GUuCGCUGACCa -3'
miRNA:   3'- cgUCGa-CguCCACAgCGcGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 233524 0.68 0.80241
Target:  5'- cGCAGguggGUAGGUGUCGCGUaaucGUagggGGCCu -3'
miRNA:   3'- -CGUCga--CGUCCACAGCGCG----CGa---CUGG- -5'
13993 5' -58 NC_003521.1 + 232363 0.67 0.850901
Target:  5'- cGCGGCgGCaccgcgaagcggAGGUccaccGUCuCGCGCUGGCUg -3'
miRNA:   3'- -CGUCGaCG------------UCCA-----CAGcGCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 228378 0.66 0.92211
Target:  5'- uGCAGC-GuCAGGUGUUGC-CGC-GAgCa -3'
miRNA:   3'- -CGUCGaC-GUCCACAGCGcGCGaCUgG- -5'
13993 5' -58 NC_003521.1 + 226885 0.68 0.817563
Target:  5'- gGCAGCUGCGGGggcaccacggCGgccaGCGC-GGCCu -3'
miRNA:   3'- -CGUCGACGUCCaca-------GCg---CGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 226152 0.66 0.916695
Target:  5'- aGCGGCgGCAcucGGcGUCGUucaGCGCgcagaagGGCCa -3'
miRNA:   3'- -CGUCGaCGU---CCaCAGCG---CGCGa------CUGG- -5'
13993 5' -58 NC_003521.1 + 225489 0.66 0.92211
Target:  5'- cGCGacuGCUGCAcca---GCGCGCUGAUCa -3'
miRNA:   3'- -CGU---CGACGUccacagCGCGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 223267 0.69 0.793789
Target:  5'- aCAGCUGCAgaucGGUGacgaugcguUCGCGCaaCUGGCUg -3'
miRNA:   3'- cGUCGACGU----CCAC---------AGCGCGc-GACUGG- -5'
13993 5' -58 NC_003521.1 + 222230 0.66 0.91106
Target:  5'- cGCGGCUgggccGCAGGaaccaGUCgaGCGCGCUcuCCa -3'
miRNA:   3'- -CGUCGA-----CGUCCa----CAG--CGCGCGAcuGG- -5'
13993 5' -58 NC_003521.1 + 222100 0.7 0.739527
Target:  5'- uGCAGCgccgGCAGcGUcUCGagGCGCUGcGCCg -3'
miRNA:   3'- -CGUCGa---CGUC-CAcAGCg-CGCGAC-UGG- -5'
13993 5' -58 NC_003521.1 + 222007 0.66 0.904012
Target:  5'- uGCGGCguggGCGGGaagcacuUGgccaCGCgaaagcaGCGCUGGCCc -3'
miRNA:   3'- -CGUCGa---CGUCC-------ACa---GCG-------CGCGACUGG- -5'
13993 5' -58 NC_003521.1 + 220975 0.66 0.92211
Target:  5'- aGC-GCUGCAGcuccacGUCGCGgGCgaacguguaggUGGCCa -3'
miRNA:   3'- -CGuCGACGUCca----CAGCGCgCG-----------ACUGG- -5'
13993 5' -58 NC_003521.1 + 217521 0.68 0.819217
Target:  5'- cGguGCUGUAGacc-CGCGUGCaGACCa -3'
miRNA:   3'- -CguCGACGUCcacaGCGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 213539 0.7 0.711123
Target:  5'- gGCAGCUcggagcacCAGGUGUagaugaGCGUGC-GACCg -3'
miRNA:   3'- -CGUCGAc-------GUCCACAg-----CGCGCGaCUGG- -5'
13993 5' -58 NC_003521.1 + 213108 0.68 0.82739
Target:  5'- cGCGGCUcgacGCgcuGGGUGUgGCGUGgUGcgGCCg -3'
miRNA:   3'- -CGUCGA----CG---UCCACAgCGCGCgAC--UGG- -5'
13993 5' -58 NC_003521.1 + 212218 0.71 0.672423
Target:  5'- uGCAGCaccacguaGCGGGUGagGuCGCGCUcGCCg -3'
miRNA:   3'- -CGUCGa-------CGUCCACagC-GCGCGAcUGG- -5'
13993 5' -58 NC_003521.1 + 211463 0.67 0.88637
Target:  5'- cGCGGCcGCGGGUucgcacuccGUCcaGUGCGCgUGGCa -3'
miRNA:   3'- -CGUCGaCGUCCA---------CAG--CGCGCG-ACUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.