miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13995 3' -64 NC_003521.1 + 84217 0.66 0.704827
Target:  5'- aGCACCaGGCGCGAgaGGCCgCgcugcaccaccucggGGUGgaUGCg -3'
miRNA:   3'- -CGUGGgCCGCGCU--CCGG-Ga--------------CCAC--GCG- -5'
13995 3' -64 NC_003521.1 + 64345 0.66 0.703908
Target:  5'- -aGCCa-GCuGC-AGGCCCUGG-GCGCc -3'
miRNA:   3'- cgUGGgcCG-CGcUCCGGGACCaCGCG- -5'
13995 3' -64 NC_003521.1 + 197322 0.66 0.703908
Target:  5'- -gAUCUGGUcgGCcAGGCCCUGG-GCGa -3'
miRNA:   3'- cgUGGGCCG--CGcUCCGGGACCaCGCg -5'
13995 3' -64 NC_003521.1 + 127336 0.66 0.703908
Target:  5'- gGCugCCGGUcggccacgaucuGCac-GCCCuccgUGGUGCGCg -3'
miRNA:   3'- -CGugGGCCG------------CGcucCGGG----ACCACGCG- -5'
13995 3' -64 NC_003521.1 + 2315 0.66 0.703908
Target:  5'- cGCACCUGcuGCGCGccGGCcuCCUGGgGCuGCu -3'
miRNA:   3'- -CGUGGGC--CGCGCu-CCG--GGACCaCG-CG- -5'
13995 3' -64 NC_003521.1 + 45643 0.66 0.703908
Target:  5'- cGC-CgCCGGCuccGCGGGGUCCg---GCGCa -3'
miRNA:   3'- -CGuG-GGCCG---CGCUCCGGGaccaCGCG- -5'
13995 3' -64 NC_003521.1 + 226281 0.66 0.703908
Target:  5'- uGCGCUCGGCcgugGCGuacGaGCCCUcGG-GCGUg -3'
miRNA:   3'- -CGUGGGCCG----CGCu--C-CGGGA-CCaCGCG- -5'
13995 3' -64 NC_003521.1 + 129787 0.66 0.703908
Target:  5'- cGCACgUGcGCGcCGAGGCCgaccgcgucaagUUGGUGCu- -3'
miRNA:   3'- -CGUGgGC-CGC-GCUCCGG------------GACCACGcg -5'
13995 3' -64 NC_003521.1 + 202543 0.66 0.703908
Target:  5'- cGCACCUGcuGCGCGccGGCcuCCUGGgGCuGCu -3'
miRNA:   3'- -CGUGGGC--CGCGCu-CCG--GGACCaCG-CG- -5'
13995 3' -64 NC_003521.1 + 206515 0.66 0.694685
Target:  5'- cGCuCCCuguacacGCGCGAgccccucacGGCCCUGG-GCGa -3'
miRNA:   3'- -CGuGGGc------CGCGCU---------CCGGGACCaCGCg -5'
13995 3' -64 NC_003521.1 + 177779 0.66 0.694685
Target:  5'- uCGCCagGGcCGaCGGGGCCuguccgCUGGUGgGCg -3'
miRNA:   3'- cGUGGg-CC-GC-GCUCCGG------GACCACgCG- -5'
13995 3' -64 NC_003521.1 + 183892 0.66 0.694685
Target:  5'- gGCACgaGGC-CGAGGUgCUGGaggcgGUGCu -3'
miRNA:   3'- -CGUGggCCGcGCUCCGgGACCa----CGCG- -5'
13995 3' -64 NC_003521.1 + 78448 0.66 0.694685
Target:  5'- aCAUCCucuucGGCGCGGcugggaacgcGGCCC-GGcGCGCg -3'
miRNA:   3'- cGUGGG-----CCGCGCU----------CCGGGaCCaCGCG- -5'
13995 3' -64 NC_003521.1 + 139200 0.66 0.694685
Target:  5'- cGCGCuaCCaGCGCcGGGCCCUGGccGaCGUc -3'
miRNA:   3'- -CGUG--GGcCGCGcUCCGGGACCa-C-GCG- -5'
13995 3' -64 NC_003521.1 + 120527 0.66 0.694685
Target:  5'- uCGCCCGGgGaaGGGCCCUcGGcgGCcgGCg -3'
miRNA:   3'- cGUGGGCCgCgcUCCGGGA-CCa-CG--CG- -5'
13995 3' -64 NC_003521.1 + 61255 0.66 0.694685
Target:  5'- aGCGuCgCGGUGUGGGGCCa--GUGuCGCa -3'
miRNA:   3'- -CGU-GgGCCGCGCUCCGGgacCAC-GCG- -5'
13995 3' -64 NC_003521.1 + 153038 0.66 0.694685
Target:  5'- aGCGCUacgGGCcucaGCaccuGGCCCUGGccUGCGCc -3'
miRNA:   3'- -CGUGGg--CCG----CGcu--CCGGGACC--ACGCG- -5'
13995 3' -64 NC_003521.1 + 126408 0.66 0.694685
Target:  5'- -aGCCCGG-GUGgauguGGGCCUUGGUcUGCa -3'
miRNA:   3'- cgUGGGCCgCGC-----UCCGGGACCAcGCG- -5'
13995 3' -64 NC_003521.1 + 122679 0.66 0.694685
Target:  5'- gGCGCCCaGCaccgacagcuGCGGGGCCggucGGuUGUGCa -3'
miRNA:   3'- -CGUGGGcCG----------CGCUCCGGga--CC-ACGCG- -5'
13995 3' -64 NC_003521.1 + 103662 0.66 0.694685
Target:  5'- aGCACCUGGCccuccGUGuGGCCgaaGGUGCu- -3'
miRNA:   3'- -CGUGGGCCG-----CGCuCCGGga-CCACGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.