miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13999 5' -62 NC_003521.1 + 193244 1.12 0.001051
Target:  5'- aGGACUCCGACCGCCACCGUGGCCCGCu -3'
miRNA:   3'- -CCUGAGGCUGGCGGUGGCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 137597 0.74 0.383044
Target:  5'- --uCUUgGGCCGCCGCC-UGGCCgGCg -3'
miRNA:   3'- ccuGAGgCUGGCGGUGGcACCGGgCG- -5'
13999 5' -62 NC_003521.1 + 140295 0.73 0.406322
Target:  5'- cGGAUccccagCUGucCCGCCACCGUGcaccguccgacGCCCGCg -3'
miRNA:   3'- -CCUGa-----GGCu-GGCGGUGGCAC-----------CGGGCG- -5'
13999 5' -62 NC_003521.1 + 216551 0.65 0.820696
Target:  5'- uGGACcugCCGAgggaauccaggUCGCCGCCGauauaccgcccgaccGCCCGCu -3'
miRNA:   3'- -CCUGa--GGCU-----------GGCGGUGGCac-------------CGGGCG- -5'
13999 5' -62 NC_003521.1 + 135015 0.78 0.225112
Target:  5'- ---aUCUGGCUGCCgggcACCGUGGCCUGCg -3'
miRNA:   3'- ccugAGGCUGGCGG----UGGCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 14748 0.76 0.268643
Target:  5'- uGACgggCCGGCCGCgGCCGgGGCgCGCc -3'
miRNA:   3'- cCUGa--GGCUGGCGgUGGCaCCGgGCG- -5'
13999 5' -62 NC_003521.1 + 94961 0.76 0.292845
Target:  5'- cGGCgCCGcCCGCCGCCG-GGCCCa- -3'
miRNA:   3'- cCUGaGGCuGGCGGUGGCaCCGGGcg -5'
13999 5' -62 NC_003521.1 + 148934 0.75 0.301709
Target:  5'- gGGGgUCCGuccguccguggucgcACCGCCGCCGccguccUGGUCCGCc -3'
miRNA:   3'- -CCUgAGGC---------------UGGCGGUGGC------ACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 212839 0.75 0.339223
Target:  5'- -cGCUCaCG-CUGCCGCCGUGGCCgugaGCg -3'
miRNA:   3'- ccUGAG-GCuGGCGGUGGCACCGGg---CG- -5'
13999 5' -62 NC_003521.1 + 76759 0.74 0.375484
Target:  5'- cGAcCUCCGAggcgaCCGUCGCCGUGGCCgagGCc -3'
miRNA:   3'- cCU-GAGGCU-----GGCGGUGGCACCGGg--CG- -5'
13999 5' -62 NC_003521.1 + 166632 0.74 0.36067
Target:  5'- cGGCgUCgGGCCGCgCGCCG-GGCgCCGCg -3'
miRNA:   3'- cCUG-AGgCUGGCG-GUGGCaCCG-GGCG- -5'
13999 5' -62 NC_003521.1 + 77055 0.75 0.318717
Target:  5'- -cGCUaCCGuuguuGCCGCCGCCGUGaGCgCCGCu -3'
miRNA:   3'- ccUGA-GGC-----UGGCGGUGGCAC-CG-GGCG- -5'
13999 5' -62 NC_003521.1 + 154616 0.81 0.129043
Target:  5'- cGGCgugCCG-CCGCCcuucgccuccACCGUGGCCCGCg -3'
miRNA:   3'- cCUGa--GGCuGGCGG----------UGGCACCGGGCG- -5'
13999 5' -62 NC_003521.1 + 148865 0.74 0.368026
Target:  5'- cGGGUUCCGcccucGCCGCCACgG-GGUCCGCc -3'
miRNA:   3'- -CCUGAGGC-----UGGCGGUGgCaCCGGGCG- -5'
13999 5' -62 NC_003521.1 + 167 0.79 0.183446
Target:  5'- cGGCUCCGGCCGCCGCUucGGCCUcccuGCa -3'
miRNA:   3'- cCUGAGGCUGGCGGUGGcaCCGGG----CG- -5'
13999 5' -62 NC_003521.1 + 209731 0.75 0.312091
Target:  5'- cGugUaCCGGCCGCCGCCGUcgucgcuguuGGCCgGUu -3'
miRNA:   3'- cCugA-GGCUGGCGGUGGCA----------CCGGgCG- -5'
13999 5' -62 NC_003521.1 + 31260 0.74 0.375484
Target:  5'- cGGAC-CCG-CCGCCACCGUcG-CCGCc -3'
miRNA:   3'- -CCUGaGGCuGGCGGUGGCAcCgGGCG- -5'
13999 5' -62 NC_003521.1 + 99456 0.73 0.406322
Target:  5'- cGGGCaccgcgucaCCGACCGCCGCCGcacccgUGGgaaCCGCa -3'
miRNA:   3'- -CCUGa--------GGCUGGCGGUGGC------ACCg--GGCG- -5'
13999 5' -62 NC_003521.1 + 240716 0.79 0.183446
Target:  5'- cGGCUCCGGCCGCCGCUucGGCCUcccuGCa -3'
miRNA:   3'- cCUGAGGCUGGCGGUGGcaCCGGG----CG- -5'
13999 5' -62 NC_003521.1 + 74700 0.76 0.292845
Target:  5'- cGACcugCCGGCCGCC-CUGaagcaGGCCCGCg -3'
miRNA:   3'- cCUGa--GGCUGGCGGuGGCa----CCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.