miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14003 3' -56.3 NC_003521.1 + 240602 0.66 0.950701
Target:  5'- aGUCACgGAaccgguuucCGCgGCGGCgugCGGCgggCCg -3'
miRNA:   3'- -CAGUGgCU---------GUG-CGCCGaaaGCCGa--GG- -5'
14003 3' -56.3 NC_003521.1 + 240383 0.66 0.950701
Target:  5'- cUCACCGGCugGCuuaccgccGGCU--UGGCcucgCCa -3'
miRNA:   3'- cAGUGGCUGugCG--------CCGAaaGCCGa---GG- -5'
14003 3' -56.3 NC_003521.1 + 239659 0.69 0.880561
Target:  5'- aGUC-CCG-UAgGCGGCgccgUGGCUCCc -3'
miRNA:   3'- -CAGuGGCuGUgCGCCGaaa-GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 239383 0.71 0.776916
Target:  5'- -cCACCGGCgGCGCaGCUcgCGGC-CCa -3'
miRNA:   3'- caGUGGCUG-UGCGcCGAaaGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 239110 0.69 0.844116
Target:  5'- aUCAgCCGACACGCucgGGUUUUccugCGGCgUCCc -3'
miRNA:   3'- cAGU-GGCUGUGCG---CCGAAA----GCCG-AGG- -5'
14003 3' -56.3 NC_003521.1 + 238841 0.66 0.956056
Target:  5'- uUCGCCGuaugcguuauuagagGCGCGcCGGCUgggugucccgCGGgUCCg -3'
miRNA:   3'- cAGUGGC---------------UGUGC-GCCGAaa--------GCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 234785 0.66 0.950701
Target:  5'- -cCGCUGGgGCaCGGCUUacucgUCGGgCUCCu -3'
miRNA:   3'- caGUGGCUgUGcGCCGAA-----AGCC-GAGG- -5'
14003 3' -56.3 NC_003521.1 + 234430 0.67 0.937806
Target:  5'- cGUCGCCG-C-CGCGGUagcugCGGCgCCc -3'
miRNA:   3'- -CAGUGGCuGuGCGCCGaaa--GCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 233380 0.67 0.93307
Target:  5'- cGUCGCCGGgAuccggagcUGCcGCUgccgucUCGGCUCCu -3'
miRNA:   3'- -CAGUGGCUgU--------GCGcCGAa-----AGCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 230404 0.74 0.594214
Target:  5'- -cCGCCGACACGCGGUUUUUgagaugcggGGCgacgcgguaUCCa -3'
miRNA:   3'- caGUGGCUGUGCGCCGAAAG---------CCG---------AGG- -5'
14003 3' -56.3 NC_003521.1 + 224825 0.68 0.900013
Target:  5'- cGUCugCGGCugGCGGUagaUGGaCUCg -3'
miRNA:   3'- -CAGugGCUGugCGCCGaaaGCC-GAGg -5'
14003 3' -56.3 NC_003521.1 + 224735 0.76 0.498438
Target:  5'- cUCGCCGACGCagGCGGCcagcgcgUCggGGCUCCg -3'
miRNA:   3'- cAGUGGCUGUG--CGCCGaa-----AG--CCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 223757 0.66 0.964922
Target:  5'- gGUCGCCGcCA-GCGGUaucgUCGGCgCUg -3'
miRNA:   3'- -CAGUGGCuGUgCGCCGaa--AGCCGaGG- -5'
14003 3' -56.3 NC_003521.1 + 221904 0.74 0.604027
Target:  5'- aUUGCCGGCGCGCGGCgccacccUUCggGGCUgCCg -3'
miRNA:   3'- cAGUGGCUGUGCGCCGa------AAG--CCGA-GG- -5'
14003 3' -56.3 NC_003521.1 + 221272 0.73 0.683625
Target:  5'- -cCACCGAgCACGCGGCcaagaccccgauccUCGGgUCCg -3'
miRNA:   3'- caGUGGCU-GUGCGCCGaa------------AGCCgAGG- -5'
14003 3' -56.3 NC_003521.1 + 218622 0.7 0.820065
Target:  5'- -cCGCCaGCGCGCGGCgguaagCGGCcacggCCg -3'
miRNA:   3'- caGUGGcUGUGCGCCGaaa---GCCGa----GG- -5'
14003 3' -56.3 NC_003521.1 + 216399 0.69 0.851785
Target:  5'- -cCGCCGGCcccuGCGCcgucuGGCUUUCuauGCUCCg -3'
miRNA:   3'- caGUGGCUG----UGCG-----CCGAAAGc--CGAGG- -5'
14003 3' -56.3 NC_003521.1 + 214827 0.68 0.900013
Target:  5'- gGUCugCGGCGCuGCGGCUUcaucacCGuGC-CCg -3'
miRNA:   3'- -CAGugGCUGUG-CGCCGAAa-----GC-CGaGG- -5'
14003 3' -56.3 NC_003521.1 + 214817 0.74 0.604027
Target:  5'- -gCGCCGG-GCGCGGCgacggCGGUUCCa -3'
miRNA:   3'- caGUGGCUgUGCGCCGaaa--GCCGAGG- -5'
14003 3' -56.3 NC_003521.1 + 214280 0.7 0.828249
Target:  5'- cGUCGCUGGCAUaaaGCGucgacGCUccUUGGCUCCg -3'
miRNA:   3'- -CAGUGGCUGUG---CGC-----CGAa-AGCCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.