miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14006 3' -57.3 NC_003521.1 + 140567 0.7 0.785035
Target:  5'- cGGCGGCggCGACAgCUCGUCgUCGggcaCCUCg -3'
miRNA:   3'- -UCGCUGagGCUGU-GAGCAG-AGC----GGAG- -5'
14006 3' -57.3 NC_003521.1 + 198399 0.66 0.92577
Target:  5'- cGGCGACUCCGGCGUUUGaUUauaaugacgccgguUCGCCa- -3'
miRNA:   3'- -UCGCUGAGGCUGUGAGC-AG--------------AGCGGag -5'
14006 3' -57.3 NC_003521.1 + 93930 0.67 0.886369
Target:  5'- cGGCGACUaCCGcugccCGCcgUCGUCUgGCUUCc -3'
miRNA:   3'- -UCGCUGA-GGCu----GUG--AGCAGAgCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 26920 0.7 0.776154
Target:  5'- cGCG-CUCCaGACACgcucgCGaCUCGCCUUc -3'
miRNA:   3'- uCGCuGAGG-CUGUGa----GCaGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 213147 0.66 0.941574
Target:  5'- cGUGAuCUCCGcGCGCUCG-CUCGUgUg -3'
miRNA:   3'- uCGCU-GAGGC-UGUGAGCaGAGCGgAg -5'
14006 3' -57.3 NC_003521.1 + 223613 0.73 0.594033
Target:  5'- cGCGACggCGACGCUCuucUCUCGCCa- -3'
miRNA:   3'- uCGCUGagGCUGUGAGc--AGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 189254 1.08 0.004101
Target:  5'- gAGCGACUCCGACACUCGUCUCGCCUCc -3'
miRNA:   3'- -UCGCUGAGGCUGUGAGCAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 162633 0.71 0.720663
Target:  5'- cGCGcccGCUCCGcACGC-CGUUUCGCCa- -3'
miRNA:   3'- uCGC---UGAGGC-UGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 127884 0.67 0.899141
Target:  5'- cGCGGCgugcacagCGGCAC-CGUCUCGCUg- -3'
miRNA:   3'- uCGCUGag------GCUGUGaGCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 122093 0.67 0.89286
Target:  5'- cAGCGACUUggucucgugCGGCugcaGCggCGUCUCGCCg- -3'
miRNA:   3'- -UCGCUGAG---------GCUG----UGa-GCAGAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 221709 0.69 0.827389
Target:  5'- cGGCGGC-CCGcCACccgcgUCGUCUC-CCUCc -3'
miRNA:   3'- -UCGCUGaGGCuGUG-----AGCAGAGcGGAG- -5'
14006 3' -57.3 NC_003521.1 + 64534 0.69 0.827389
Target:  5'- cGCGACgacgCCGACGCcCGUCUgcUGCUgcUCa -3'
miRNA:   3'- uCGCUGa---GGCUGUGaGCAGA--GCGG--AG- -5'
14006 3' -57.3 NC_003521.1 + 34213 0.69 0.827389
Target:  5'- gGGCGGCguagaCGGCGCcCGUgUCGCCg- -3'
miRNA:   3'- -UCGCUGag---GCUGUGaGCAgAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 138159 0.69 0.819217
Target:  5'- cGGCGGCUUCGcCGuCUCcUCgCGCCUCu -3'
miRNA:   3'- -UCGCUGAGGCuGU-GAGcAGaGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 95982 0.72 0.672422
Target:  5'- gAGCGAuCUCCG-CugUCGUCUCccgcgGCgCUCa -3'
miRNA:   3'- -UCGCU-GAGGCuGugAGCAGAG-----CG-GAG- -5'
14006 3' -57.3 NC_003521.1 + 92589 0.67 0.886369
Target:  5'- uGGCGGCUCCGgguugggugugGCAUcCGgucCUCGCCg- -3'
miRNA:   3'- -UCGCUGAGGC-----------UGUGaGCa--GAGCGGag -5'
14006 3' -57.3 NC_003521.1 + 112370 0.67 0.886369
Target:  5'- cGGCGGCUgCGGCGuCUCGUC-CaCCUg -3'
miRNA:   3'- -UCGCUGAgGCUGU-GAGCAGaGcGGAg -5'
14006 3' -57.3 NC_003521.1 + 133582 0.67 0.886369
Target:  5'- gAGCGACaUCCcGCGCUCuUCgaGCCUCc -3'
miRNA:   3'- -UCGCUG-AGGcUGUGAGcAGagCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 40938 0.67 0.886369
Target:  5'- gAGCGccaucuuaUCUGaACACgaugUCGUCUUGCCUCg -3'
miRNA:   3'- -UCGCug------AGGC-UGUG----AGCAGAGCGGAG- -5'
14006 3' -57.3 NC_003521.1 + 137134 0.67 0.89286
Target:  5'- cGCG-UUCgGACGCUCGgaCUCGCC-Cg -3'
miRNA:   3'- uCGCuGAGgCUGUGAGCa-GAGCGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.