miRNA display CGI


Results 1 - 20 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 240652 0.71 0.936961
Target:  5'- --cAGGGAggccgaaGCGGCGGCCGgAGCc -3'
miRNA:   3'- cuuUCCCUauug---CGCUGUCGGCgUUG- -5'
14009 3' -51.5 NC_003521.1 + 239231 0.71 0.941737
Target:  5'- --uGGuGGAUGugGCGcugcACGGCCGuCAGCa -3'
miRNA:   3'- cuuUC-CCUAUugCGC----UGUCGGC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 238716 0.67 0.993175
Target:  5'- cAGAGGaGGUAGCacCGGCAGCaguuccaGCAGCa -3'
miRNA:   3'- cUUUCC-CUAUUGc-GCUGUCGg------CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 237176 0.69 0.97684
Target:  5'- -cGAGGca-GACgGCGGCGGCCGUGGCa -3'
miRNA:   3'- cuUUCCcuaUUG-CGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 236343 0.66 0.997692
Target:  5'- -cGGGGGAgGACGauaaaagauCGGgGGCCGCAGg -3'
miRNA:   3'- cuUUCCCUaUUGC---------GCUgUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 236143 0.74 0.845092
Target:  5'- cGggGGGGAccGCGCGAC-GUCGcCGGCg -3'
miRNA:   3'- -CuuUCCCUauUGCGCUGuCGGC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 235270 0.66 0.996784
Target:  5'- cGGAcGGAacaacgAugGCGGCGGCCGCGc- -3'
miRNA:   3'- cUUUcCCUa-----UugCGCUGUCGGCGUug -5'
14009 3' -51.5 NC_003521.1 + 228708 0.67 0.989786
Target:  5'- cGAAGG---AGCGCGGCGGCgGCAu- -3'
miRNA:   3'- cUUUCCcuaUUGCGCUGUCGgCGUug -5'
14009 3' -51.5 NC_003521.1 + 226415 0.76 0.715862
Target:  5'- cGAuAGGcGAUcuccgAGCGCGACAcGCCGUAGCg -3'
miRNA:   3'- -CUuUCC-CUA-----UUGCGCUGU-CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 226182 0.67 0.991037
Target:  5'- aGAAGGGccaGACGCacuGCAGCUGCuGCa -3'
miRNA:   3'- cUUUCCCua-UUGCGc--UGUCGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 223940 0.7 0.965436
Target:  5'- cGAGGGGGu---CGaGGCGGCCGCGGg -3'
miRNA:   3'- -CUUUCCCuauuGCgCUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 221896 0.66 0.99646
Target:  5'- uGGGGcGGAUugccggcGCGCGGCGccacccuucggggcuGCCGCGGCg -3'
miRNA:   3'- cUUUC-CCUAu------UGCGCUGU---------------CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 218701 0.69 0.97684
Target:  5'- cGAAGGcGGAggaGACgGCGGCGGCgGCGGg -3'
miRNA:   3'- -CUUUC-CCUa--UUG-CGCUGUCGgCGUUg -5'
14009 3' -51.5 NC_003521.1 + 216824 0.71 0.936961
Target:  5'- ----cGGAUGGCGCGcaggaggucGCAGCCcGCGGCg -3'
miRNA:   3'- cuuucCCUAUUGCGC---------UGUCGG-CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 216743 0.71 0.941737
Target:  5'- aGAGGGGAUGAgGCGACGGgCuCAGg -3'
miRNA:   3'- cUUUCCCUAUUgCGCUGUCgGcGUUg -5'
14009 3' -51.5 NC_003521.1 + 216111 0.71 0.936961
Target:  5'- uGAAcuGGuugAGCGCGGCgcggaGGCCGCGGCa -3'
miRNA:   3'- -CUUucCCua-UUGCGCUG-----UCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 213324 0.69 0.968597
Target:  5'- uGAAGaGGAUGGCGCcgUAGCCGUAGa -3'
miRNA:   3'- cUUUC-CCUAUUGCGcuGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 213123 0.77 0.695632
Target:  5'- ---uGGGuGUGGCGUGguGCGGCCGCAGCg -3'
miRNA:   3'- cuuuCCC-UAUUGCGC--UGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 211552 0.7 0.950568
Target:  5'- ---cGGGAUAAC-CGuACAGCCaGUAGCg -3'
miRNA:   3'- cuuuCCCUAUUGcGC-UGUCGG-CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 211104 0.66 0.99623
Target:  5'- uGGAGGGAUGuUGUuGguGCUGCGACu -3'
miRNA:   3'- cUUUCCCUAUuGCGcUguCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.