miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 3' -55.8 NC_003521.1 + 18739 0.66 0.975873
Target:  5'- cGGCGCuGC-AGGGCGggcuguGGGAGGAc---- -3'
miRNA:   3'- -CCGCG-CGcUCCUGC------UCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 7837 0.66 0.975873
Target:  5'- cGGCGC-CaGAaGACGAGGGGGugg-CGg -3'
miRNA:   3'- -CCGCGcG-CUcCUGCUCCUCCuaaaGC- -5'
14016 3' -55.8 NC_003521.1 + 105410 0.66 0.973388
Target:  5'- cGCGCGUGAcGGCGAuGGGGAUg--- -3'
miRNA:   3'- cCGCGCGCUcCUGCUcCUCCUAaagc -5'
14016 3' -55.8 NC_003521.1 + 182844 0.66 0.973388
Target:  5'- cGGCGCugacaacagcaGCGAGGACGAuGAuGAUagCGa -3'
miRNA:   3'- -CCGCG-----------CGCUCCUGCUcCUcCUAaaGC- -5'
14016 3' -55.8 NC_003521.1 + 169201 0.66 0.973388
Target:  5'- uGGaCGgGCGGGGACGgAGGAGa------ -3'
miRNA:   3'- -CC-GCgCGCUCCUGC-UCCUCcuaaagc -5'
14016 3' -55.8 NC_003521.1 + 157594 0.66 0.973388
Target:  5'- -cCGCGCGAGuGCGugcGGGAGGccguacgcugcuGUUUCGa -3'
miRNA:   3'- ccGCGCGCUCcUGC---UCCUCC------------UAAAGC- -5'
14016 3' -55.8 NC_003521.1 + 146966 0.66 0.973388
Target:  5'- -cCGCGUcaGAGGGCG-GGAGGAacgagaUUCGu -3'
miRNA:   3'- ccGCGCG--CUCCUGCuCCUCCUa-----AAGC- -5'
14016 3' -55.8 NC_003521.1 + 178619 0.66 0.972608
Target:  5'- cGGCGUccaacgccuccuggGCGAuagGGGgGAGGAGGGUgacagUCc -3'
miRNA:   3'- -CCGCG--------------CGCU---CCUgCUCCUCCUAa----AGc -5'
14016 3' -55.8 NC_003521.1 + 44938 0.66 0.970724
Target:  5'- -aCGaCGaaGAGGACGGGGAGGAagggCGg -3'
miRNA:   3'- ccGC-GCg-CUCCUGCUCCUCCUaaa-GC- -5'
14016 3' -55.8 NC_003521.1 + 60690 0.66 0.970724
Target:  5'- cGGcCGCGCGGGGGaccCGGGGGcGGcgcgggUCGc -3'
miRNA:   3'- -CC-GCGCGCUCCU---GCUCCU-CCuaa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 11858 0.66 0.970724
Target:  5'- -cCGCGCaccuccucGGACGAGGAGGAc---- -3'
miRNA:   3'- ccGCGCGcu------CCUGCUCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 136968 0.66 0.970724
Target:  5'- uGCuGCGCGAGGAgauCGAGGccaaccGGAUagaUCGg -3'
miRNA:   3'- cCG-CGCGCUCCU---GCUCCu-----CCUAa--AGC- -5'
14016 3' -55.8 NC_003521.1 + 172661 0.66 0.967873
Target:  5'- uGCGCGCugGGGGugGAGaacGGGGUguugCGg -3'
miRNA:   3'- cCGCGCG--CUCCugCUCc--UCCUAaa--GC- -5'
14016 3' -55.8 NC_003521.1 + 206636 0.66 0.967873
Target:  5'- cGUGuCGCGAcauGGACGugcAGGGGGAUguuaugUCGc -3'
miRNA:   3'- cCGC-GCGCU---CCUGC---UCCUCCUAa-----AGC- -5'
14016 3' -55.8 NC_003521.1 + 1080 0.66 0.964831
Target:  5'- cGGCGgGCGAGGcCGAagccaGAGGAcuccuaccacgaUUUCa -3'
miRNA:   3'- -CCGCgCGCUCCuGCUc----CUCCU------------AAAGc -5'
14016 3' -55.8 NC_003521.1 + 103546 0.66 0.964831
Target:  5'- aGGCGUGCGugGGGAUGAcGGGGcccaggUCGc -3'
miRNA:   3'- -CCGCGCGC--UCCUGCUcCUCCuaa---AGC- -5'
14016 3' -55.8 NC_003521.1 + 178786 0.66 0.964831
Target:  5'- cGGCGUccGCG-GGACGGGcGAGGcAUgccCGg -3'
miRNA:   3'- -CCGCG--CGCuCCUGCUC-CUCC-UAaa-GC- -5'
14016 3' -55.8 NC_003521.1 + 191379 0.66 0.964831
Target:  5'- aGCGCGCaGAcGGCGuGGAGGAc---- -3'
miRNA:   3'- cCGCGCG-CUcCUGCuCCUCCUaaagc -5'
14016 3' -55.8 NC_003521.1 + 125731 0.66 0.964831
Target:  5'- gGGCG-GCGAcGGCGcAGGgcAGGGUUUCu -3'
miRNA:   3'- -CCGCgCGCUcCUGC-UCC--UCCUAAAGc -5'
14016 3' -55.8 NC_003521.1 + 86891 0.66 0.964831
Target:  5'- cGGCGCgGCGGGuGGcCGAGGAGuGGa---- -3'
miRNA:   3'- -CCGCG-CGCUC-CU-GCUCCUC-CUaaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.