miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 196993 0.69 0.983552
Target:  5'- cUGC-AGGUgUCGCCaGUGAagccgucgUCAGUGCa -3'
miRNA:   3'- -ACGuUUUAgAGCGGgCACU--------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 196415 0.66 0.996253
Target:  5'- gGCAGcggcacagacAGUCgcugUCGCCCG-GGUCGGCcgGCu -3'
miRNA:   3'- aCGUU----------UUAG----AGCGGGCaCUAGUCG--CG- -5'
14016 5' -51.4 NC_003521.1 + 195840 0.69 0.974598
Target:  5'- aGCGAGAUCUCGCgCGgcagGGuUCGGggauCGCg -3'
miRNA:   3'- aCGUUUUAGAGCGgGCa---CU-AGUC----GCG- -5'
14016 5' -51.4 NC_003521.1 + 194897 0.7 0.971891
Target:  5'- cGCGAGA--UCGCCUGggcGAUCuuuguGCGCa -3'
miRNA:   3'- aCGUUUUagAGCGGGCa--CUAGu----CGCG- -5'
14016 5' -51.4 NC_003521.1 + 194711 0.72 0.904454
Target:  5'- cUGCGAAcgCUgCGUCCG-GAggCGGCGCu -3'
miRNA:   3'- -ACGUUUuaGA-GCGGGCaCUa-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 194598 0.67 0.994922
Target:  5'- gGU--GAUCUCGUCgaGUaguaaaagcuGAUCAGCGCg -3'
miRNA:   3'- aCGuuUUAGAGCGGg-CA----------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 193599 0.71 0.9512
Target:  5'- cGCGGu-UUUCGCCCcuUGGUCGGUGUg -3'
miRNA:   3'- aCGUUuuAGAGCGGGc-ACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 183303 1.12 0.008475
Target:  5'- cUGCAAAAUCUCGCCCGUGAUCAGCGCc -3'
miRNA:   3'- -ACGUUUUAGAGCGGGCACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 182384 0.75 0.795573
Target:  5'- cGCGGAAagUUCGCCCGg---CAGCGCu -3'
miRNA:   3'- aCGUUUUa-GAGCGGGCacuaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 182250 0.72 0.9222
Target:  5'- cGCAu-GUCUCGCuagCCGUGAUUGGCu- -3'
miRNA:   3'- aCGUuuUAGAGCG---GGCACUAGUCGcg -5'
14016 5' -51.4 NC_003521.1 + 181351 0.68 0.98536
Target:  5'- cUGCAGcguGAUUgucgCGCCCG-GAUCGGacaGCc -3'
miRNA:   3'- -ACGUU---UUAGa---GCGGGCaCUAGUCg--CG- -5'
14016 5' -51.4 NC_003521.1 + 179061 0.66 0.997702
Target:  5'- aGCAGAagcgucagcggGUCgcgUGCCCGUcGUCGGUGa -3'
miRNA:   3'- aCGUUU-----------UAGa--GCGGGCAcUAGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 175275 0.71 0.932826
Target:  5'- cUGCucguAGUCggUGCCCGUGAacacggucUCGGCGUc -3'
miRNA:   3'- -ACGuu--UUAGa-GCGGGCACU--------AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 174784 0.66 0.996253
Target:  5'- gGUAccGUCUUGCCCagcauuucuGUCAGCGCc -3'
miRNA:   3'- aCGUuuUAGAGCGGGcac------UAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 173523 0.67 0.993232
Target:  5'- aUGCAGAA-CUCGUCgGgcGUCAGgCGCa -3'
miRNA:   3'- -ACGUUUUaGAGCGGgCacUAGUC-GCG- -5'
14016 5' -51.4 NC_003521.1 + 173428 0.67 0.993232
Target:  5'- cGCGuuGga-UGCCCGUGGUCAGgGa -3'
miRNA:   3'- aCGUuuUagaGCGGGCACUAGUCgCg -5'
14016 5' -51.4 NC_003521.1 + 173031 0.71 0.937778
Target:  5'- aGCAcGcgCUCGCCgGUGggCAGCu- -3'
miRNA:   3'- aCGUuUuaGAGCGGgCACuaGUCGcg -5'
14016 5' -51.4 NC_003521.1 + 172547 0.69 0.97711
Target:  5'- gGCGggGGAUCUCGugccgcuguCCCGgGGUCGGCGg -3'
miRNA:   3'- aCGU--UUUAGAGC---------GGGCaCUAGUCGCg -5'
14016 5' -51.4 NC_003521.1 + 171038 0.66 0.996853
Target:  5'- gGUAAGAgauguucacccccggCUCGCCCGUccGAUCA-UGCa -3'
miRNA:   3'- aCGUUUUa--------------GAGCGGGCA--CUAGUcGCG- -5'
14016 5' -51.4 NC_003521.1 + 169580 0.76 0.758179
Target:  5'- gGCGGGAUCguggCGUCUGUGcuGUCAGUGCc -3'
miRNA:   3'- aCGUUUUAGa---GCGGGCAC--UAGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.