miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 5' -62.5 NC_003521.1 + 170872 0.66 0.781409
Target:  5'- gGGGGcGGGC-GCGG-GUGGUcagGCGuCCg -3'
miRNA:   3'- -CCCU-CCCGuCGCCgCACCA---CGCuGGg -5'
14021 5' -62.5 NC_003521.1 + 58 0.66 0.781409
Target:  5'- cGGAaccGGuuuccGCGGCGGCGUGcG-GCGGgCCg -3'
miRNA:   3'- cCCU---CC-----CGUCGCCGCAC-CaCGCUgGG- -5'
14021 5' -62.5 NC_003521.1 + 240607 0.66 0.781409
Target:  5'- cGGAaccGGuuuccGCGGCGGCGUGcG-GCGGgCCg -3'
miRNA:   3'- cCCU---CC-----CGUCGCCGCAC-CaCGCUgGG- -5'
14021 5' -62.5 NC_003521.1 + 78444 0.66 0.781409
Target:  5'- cGGGAcauccucuucGGC-GCGGC-UGGgaacGCGGCCCg -3'
miRNA:   3'- -CCCUc---------CCGuCGCCGcACCa---CGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 200286 0.66 0.781409
Target:  5'- cGGAaccGGuuuccGCGGCGGCGUGcG-GCGGgCCg -3'
miRNA:   3'- cCCU---CC-----CGUCGCCGCAC-CaCGCUgGG- -5'
14021 5' -62.5 NC_003521.1 + 81627 0.66 0.77283
Target:  5'- aGGGAgucguGGGUcuCGGCGcggaUGGUGCGGucugaacucuCCCa -3'
miRNA:   3'- -CCCU-----CCCGucGCCGC----ACCACGCU----------GGG- -5'
14021 5' -62.5 NC_003521.1 + 46443 0.66 0.77283
Target:  5'- cGGcGGGGCuGCGGgGgcUGGU-CGGCCUc -3'
miRNA:   3'- -CCcUCCCGuCGCCgC--ACCAcGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 147297 0.66 0.77283
Target:  5'- aGGAGGG-GGUGGaaUGGUGauACCCa -3'
miRNA:   3'- cCCUCCCgUCGCCgcACCACgcUGGG- -5'
14021 5' -62.5 NC_003521.1 + 50806 0.66 0.771966
Target:  5'- cGGuGAuGGCAGCGGUguccccgGUGGUGgGAgCg -3'
miRNA:   3'- -CC-CUcCCGUCGCCG-------CACCACgCUgGg -5'
14021 5' -62.5 NC_003521.1 + 22354 0.66 0.764143
Target:  5'- --cGGGGCcacuGCgcccacGGCGUGGUGcCGGCCa -3'
miRNA:   3'- cccUCCCGu---CG------CCGCACCAC-GCUGGg -5'
14021 5' -62.5 NC_003521.1 + 157958 0.66 0.764143
Target:  5'- aGGcuGGGCGacGaCGGCGcUGGUaGCGACgCCg -3'
miRNA:   3'- cCCu-CCCGU--C-GCCGC-ACCA-CGCUG-GG- -5'
14021 5' -62.5 NC_003521.1 + 154776 0.66 0.764143
Target:  5'- ---cGGGCAaCGGCGUGGaGCGgaACCUc -3'
miRNA:   3'- cccuCCCGUcGCCGCACCaCGC--UGGG- -5'
14021 5' -62.5 NC_003521.1 + 149760 0.66 0.764143
Target:  5'- cGGcGAGGGCGGCcGCGcGGUaCGcCUCa -3'
miRNA:   3'- -CC-CUCCCGUCGcCGCaCCAcGCuGGG- -5'
14021 5' -62.5 NC_003521.1 + 164750 0.66 0.764143
Target:  5'- aGGGGGGCAucGCGGuCGccGG-GCGAaCCa -3'
miRNA:   3'- cCCUCCCGU--CGCC-GCa-CCaCGCUgGG- -5'
14021 5' -62.5 NC_003521.1 + 196409 0.66 0.763269
Target:  5'- uGGGcGGGCAGCGGCacagacaGUcGcUGUcGCCCg -3'
miRNA:   3'- -CCCuCCCGUCGCCG-------CAcC-ACGcUGGG- -5'
14021 5' -62.5 NC_003521.1 + 148414 0.66 0.756241
Target:  5'- aGGGAgccauggugcGGGCGGCcgcgccGGCGgcuccagggguggccGGUGCGugCUg -3'
miRNA:   3'- -CCCU----------CCCGUCG------CCGCa--------------CCACGCugGG- -5'
14021 5' -62.5 NC_003521.1 + 239451 0.66 0.755358
Target:  5'- cGGGcucGGGGaCAGCGGUGgcccgcGGcGCGuucaGCCCc -3'
miRNA:   3'- -CCC---UCCC-GUCGCCGCa-----CCaCGC----UGGG- -5'
14021 5' -62.5 NC_003521.1 + 80587 0.66 0.755358
Target:  5'- aGGuAGGGCGGCaGCG-GGU-UGACCa -3'
miRNA:   3'- cCC-UCCCGUCGcCGCaCCAcGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 221998 0.66 0.755358
Target:  5'- --uAGGGCAuguGCGGCGUGG-GCGggaagcacuugGCCa -3'
miRNA:   3'- cccUCCCGU---CGCCGCACCaCGC-----------UGGg -5'
14021 5' -62.5 NC_003521.1 + 32195 0.66 0.755358
Target:  5'- cGGGucGGGCauGGUGGgGaUGGcucgcaacGCGGCCCa -3'
miRNA:   3'- -CCCu-CCCG--UCGCCgC-ACCa-------CGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.