miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 188641 0.66 0.974384
Target:  5'- uCCugCGUCaacggaaucgCGGGCgGACCC-GCGGu -3'
miRNA:   3'- -GGugGCAGa---------GCUUGaCUGGGaCGCCc -5'
14022 5' -56.3 NC_003521.1 + 135362 0.66 0.974384
Target:  5'- gCGCCGUCUCcgcGGCgguuaucGCCC-GCGGGc -3'
miRNA:   3'- gGUGGCAGAGc--UUGac-----UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 172537 0.66 0.974136
Target:  5'- uCCACCGUCaggCGGgggaucucgugccGCUGuCCCggggucgGCGGu -3'
miRNA:   3'- -GGUGGCAGa--GCU-------------UGACuGGGa------CGCCc -5'
14022 5' -56.3 NC_003521.1 + 211066 0.66 0.971819
Target:  5'- uCCugC-UCUCGcuCUGucgccguuGCCCgGCGGGg -3'
miRNA:   3'- -GGugGcAGAGCuuGAC--------UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 234647 0.66 0.971819
Target:  5'- -gAUCGUCUCGuucugcgcCUGGCCCcGCcaGGGg -3'
miRNA:   3'- ggUGGCAGAGCuu------GACUGGGaCG--CCC- -5'
14022 5' -56.3 NC_003521.1 + 102949 0.66 0.971552
Target:  5'- gUCGCgGUCcaggcgcUCGGGCgucggGGCUCUgGCGGGg -3'
miRNA:   3'- -GGUGgCAG-------AGCUUGa----CUGGGA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 198542 0.66 0.971014
Target:  5'- gUACCGUCUgCGAGggccgcuuCUGGCUCUuucuaccgcuuucgGCGGGc -3'
miRNA:   3'- gGUGGCAGA-GCUU--------GACUGGGA--------------CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 168406 0.66 0.969074
Target:  5'- gCCGCCGUUgguggcuagggCGGGCggcagGGCCgCggcgGCGGGc -3'
miRNA:   3'- -GGUGGCAGa----------GCUUGa----CUGG-Ga---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 208454 0.66 0.969074
Target:  5'- aCCGCCGUagauagUGcAGCUGACggUGUGGGa -3'
miRNA:   3'- -GGUGGCAga----GC-UUGACUGggACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 118322 0.66 0.966143
Target:  5'- cCCGCCG-C-CGcgUUGGCCCUGCa-- -3'
miRNA:   3'- -GGUGGCaGaGCuuGACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 193011 0.66 0.966143
Target:  5'- aCC-CCGUaCUgGAACUGACC--GCGGc -3'
miRNA:   3'- -GGuGGCA-GAgCUUGACUGGgaCGCCc -5'
14022 5' -56.3 NC_003521.1 + 155887 0.66 0.963022
Target:  5'- aCACCuUCaUCGAGCgcacGCCCUGCGa- -3'
miRNA:   3'- gGUGGcAG-AGCUUGac--UGGGACGCcc -5'
14022 5' -56.3 NC_003521.1 + 176523 0.66 0.963022
Target:  5'- gCCAgCGUCgucugUGAGCc-GCgCUGCGGGg -3'
miRNA:   3'- -GGUgGCAGa----GCUUGacUGgGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 48910 0.66 0.959706
Target:  5'- aCACCGUCUCuucGGCgccGACUaucagcgGCGGGg -3'
miRNA:   3'- gGUGGCAGAGc--UUGa--CUGGga-----CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 2733 0.66 0.959706
Target:  5'- gUCACCGcCUCGcuGGCUGGCUgCUGCuacugcaaaGGGa -3'
miRNA:   3'- -GGUGGCaGAGC--UUGACUGG-GACG---------CCC- -5'
14022 5' -56.3 NC_003521.1 + 108430 0.66 0.959706
Target:  5'- aCAgCGUCUgcCGGA-UGACCUcGCGGGu -3'
miRNA:   3'- gGUgGCAGA--GCUUgACUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 120345 0.66 0.959706
Target:  5'- gCGCC-UCUCGGcGgaGACaCCUGCGGa -3'
miRNA:   3'- gGUGGcAGAGCU-UgaCUG-GGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 11741 0.67 0.95619
Target:  5'- uCgGCCGUCaUCGAcgggcccgACUcGCCCUG-GGGa -3'
miRNA:   3'- -GgUGGCAG-AGCU--------UGAcUGGGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 24782 0.67 0.95619
Target:  5'- cUCAUCGUCUuuaccCGcGACUGGCCCUG-GGc -3'
miRNA:   3'- -GGUGGCAGA-----GC-UUGACUGGGACgCCc -5'
14022 5' -56.3 NC_003521.1 + 39885 0.67 0.95619
Target:  5'- gCGCCGUacaGggUguUGGCCgaCUGCGGGa -3'
miRNA:   3'- gGUGGCAgagCuuG--ACUGG--GACGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.