miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14023 3' -53.9 NC_003521.1 + 187287 0.66 0.987787
Target:  5'- cGCGUUUcUUUCgGCAgcccggugggagcggCCGCGUCGGAc -3'
miRNA:   3'- uUGCAGA-AAAGgCGUa--------------GGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 103847 0.66 0.987638
Target:  5'- cGCGUCUcggCCuCGUCCAgGCUGGc -3'
miRNA:   3'- uUGCAGAaaaGGcGUAGGUgCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 187567 0.66 0.987638
Target:  5'- --gGUCUUUUUCGCcaaGUCCGCgggggcuucGCCGGc -3'
miRNA:   3'- uugCAGAAAAGGCG---UAGGUG---------CGGCCu -5'
14023 3' -53.9 NC_003521.1 + 123239 0.66 0.987638
Target:  5'- gGugGUCguagcgCCGCGcCCaguagACGCCGGGa -3'
miRNA:   3'- -UugCAGaaaa--GGCGUaGG-----UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 101562 0.66 0.987336
Target:  5'- cGGCGUCgucguccccCCGC-UCCGCGCgaGGAg -3'
miRNA:   3'- -UUGCAGaaaa-----GGCGuAGGUGCGg-CCU- -5'
14023 3' -53.9 NC_003521.1 + 120163 0.66 0.986073
Target:  5'- cGAUGUCUa--CCGCAucuUCCACGauCUGGAg -3'
miRNA:   3'- -UUGCAGAaaaGGCGU---AGGUGC--GGCCU- -5'
14023 3' -53.9 NC_003521.1 + 155603 0.66 0.986073
Target:  5'- cAUGUCUcugUCCgGCG-CgGCGCCGGGu -3'
miRNA:   3'- uUGCAGAaa-AGG-CGUaGgUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 181181 0.66 0.986073
Target:  5'- cAGCGUCUg--CCGCA-CCaACGCCu-- -3'
miRNA:   3'- -UUGCAGAaaaGGCGUaGG-UGCGGccu -5'
14023 3' -53.9 NC_003521.1 + 223969 0.66 0.986073
Target:  5'- cACGUCguagacgUCCGC--CUGCGCCGGc -3'
miRNA:   3'- uUGCAGaaa----AGGCGuaGGUGCGGCCu -5'
14023 3' -53.9 NC_003521.1 + 167169 0.66 0.986073
Target:  5'- gGGCGUCUUggagGCggCCGCGgCGGAg -3'
miRNA:   3'- -UUGCAGAAaaggCGuaGGUGCgGCCU- -5'
14023 3' -53.9 NC_003521.1 + 168293 0.66 0.98436
Target:  5'- -cCGUCgccgCCGCcUCCGCaGCuCGGAg -3'
miRNA:   3'- uuGCAGaaaaGGCGuAGGUG-CG-GCCU- -5'
14023 3' -53.9 NC_003521.1 + 44111 0.66 0.98436
Target:  5'- -uCGUCaagaUCUGCAUCCugGCCa-- -3'
miRNA:   3'- uuGCAGaaa-AGGCGUAGGugCGGccu -5'
14023 3' -53.9 NC_003521.1 + 46529 0.66 0.982491
Target:  5'- gGGCGUCUUcUCCaggcGCAccagggCCucGCGCCGGGu -3'
miRNA:   3'- -UUGCAGAAaAGG----CGUa-----GG--UGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 214983 0.66 0.982296
Target:  5'- cGCGUC---UCCGUGUCCcaacuguACGCCuGGAg -3'
miRNA:   3'- uUGCAGaaaAGGCGUAGG-------UGCGG-CCU- -5'
14023 3' -53.9 NC_003521.1 + 129731 0.66 0.982098
Target:  5'- -cCGUCgacgcgagCGCGUCCGCGCCGu- -3'
miRNA:   3'- uuGCAGaaaag---GCGUAGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 155475 0.66 0.98046
Target:  5'- cGAgGUCUggUUCCGCcagaaCCugGCgCGGAu -3'
miRNA:   3'- -UUgCAGAa-AAGGCGua---GGugCG-GCCU- -5'
14023 3' -53.9 NC_003521.1 + 12937 0.66 0.98046
Target:  5'- aAGCGUUUgcaacagCGCAUcCCGCGUCGGGa -3'
miRNA:   3'- -UUGCAGAaaag---GCGUA-GGUGCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 77591 0.66 0.98046
Target:  5'- uGAUGUUcg-UCCGCgaGUCCcaggcCGCCGGAg -3'
miRNA:   3'- -UUGCAGaaaAGGCG--UAGGu----GCGGCCU- -5'
14023 3' -53.9 NC_003521.1 + 15682 0.66 0.98046
Target:  5'- cGCGaCUgggUCCGCAaCCACGUCGa- -3'
miRNA:   3'- uUGCaGAaa-AGGCGUaGGUGCGGCcu -5'
14023 3' -53.9 NC_003521.1 + 27685 0.67 0.97685
Target:  5'- cAACGUCUUcaguucgcugcggCCGCA-CCACGCCa-- -3'
miRNA:   3'- -UUGCAGAAaa-----------GGCGUaGGUGCGGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.