miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14024 5' -56.7 NC_003521.1 + 167153 0.66 0.950089
Target:  5'- gCGCCUUgGGCGCCUcGGgCGucuUGGagGCg -3'
miRNA:   3'- -GUGGAGgUCGUGGA-CCaGCu--ACCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 126274 0.66 0.950089
Target:  5'- gAUCUCgCAaccGCGCCagcGGaaaUCGAUGGUGCc -3'
miRNA:   3'- gUGGAG-GU---CGUGGa--CC---AGCUACCACG- -5'
14024 5' -56.7 NC_003521.1 + 88640 0.66 0.947634
Target:  5'- uCACagcCCAGCgaggcgcagagggccGCCaGGUCGGUGGgccgGCg -3'
miRNA:   3'- -GUGga-GGUCG---------------UGGaCCAGCUACCa---CG- -5'
14024 5' -56.7 NC_003521.1 + 153047 0.66 0.945954
Target:  5'- gGCCU-CAGCACCUGG-CccUGGccUGCg -3'
miRNA:   3'- gUGGAgGUCGUGGACCaGcuACC--ACG- -5'
14024 5' -56.7 NC_003521.1 + 39847 0.66 0.945954
Target:  5'- gGCCUCCGgcguggggcuuGCACgUGGUgGGguuGUGCa -3'
miRNA:   3'- gUGGAGGU-----------CGUGgACCAgCUac-CACG- -5'
14024 5' -56.7 NC_003521.1 + 240074 0.66 0.945954
Target:  5'- gGCCUCCGgcguggggcuuGCACgUGGUgGGguuGUGCa -3'
miRNA:   3'- gUGGAGGU-----------CGUGgACCAgCUac-CACG- -5'
14024 5' -56.7 NC_003521.1 + 113558 0.66 0.945954
Target:  5'- gACCaCCAGCGCgaGGaggacgCGGUGGgGCu -3'
miRNA:   3'- gUGGaGGUCGUGgaCCa-----GCUACCaCG- -5'
14024 5' -56.7 NC_003521.1 + 130284 0.66 0.945954
Target:  5'- -cUCUCCGGCuACCUGGgCGA-GGccGCg -3'
miRNA:   3'- guGGAGGUCG-UGGACCaGCUaCCa-CG- -5'
14024 5' -56.7 NC_003521.1 + 28810 0.66 0.945954
Target:  5'- uCACCgacggCCAGUACCUGG-CGugucUGCg -3'
miRNA:   3'- -GUGGa----GGUCGUGGACCaGCuaccACG- -5'
14024 5' -56.7 NC_003521.1 + 99800 0.66 0.945954
Target:  5'- uGCC-CCAGCccuCCuggUGGUCGA-GGaUGCa -3'
miRNA:   3'- gUGGaGGUCGu--GG---ACCAGCUaCC-ACG- -5'
14024 5' -56.7 NC_003521.1 + 233022 0.66 0.945954
Target:  5'- aCGCCgUCCAGCuGCCgcuUCGAgcgcUGGUGUa -3'
miRNA:   3'- -GUGG-AGGUCG-UGGaccAGCU----ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 40251 0.66 0.945529
Target:  5'- cCGCCUCCGGCagcucacGCUUGGUUGGccGUuuGCa -3'
miRNA:   3'- -GUGGAGGUCG-------UGGACCAGCUacCA--CG- -5'
14024 5' -56.7 NC_003521.1 + 240479 0.66 0.945529
Target:  5'- cCGCCUCCGGCagcucacGCUUGGUUGGccGUuuGCa -3'
miRNA:   3'- -GUGGAGGUCG-------UGGACCAGCUacCA--CG- -5'
14024 5' -56.7 NC_003521.1 + 74040 0.66 0.943368
Target:  5'- uCACCUCCuacUGCCagaacaacgucaagaUGGUCGAccgcauccagcUGGUGCu -3'
miRNA:   3'- -GUGGAGGuc-GUGG---------------ACCAGCU-----------ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 122679 0.66 0.942045
Target:  5'- gGCgC-CCAGCACCgacagcugcggggccGGUCGGUuGUGCa -3'
miRNA:   3'- gUG-GaGGUCGUGGa--------------CCAGCUAcCACG- -5'
14024 5' -56.7 NC_003521.1 + 28500 0.66 0.9416
Target:  5'- aGCCUgCAGCACgUGG-CGAguaucaacgccUGcGUGCc -3'
miRNA:   3'- gUGGAgGUCGUGgACCaGCU-----------AC-CACG- -5'
14024 5' -56.7 NC_003521.1 + 63483 0.66 0.9416
Target:  5'- cCAUCUCCAGCGuCCUGGaCcg-GGcGCu -3'
miRNA:   3'- -GUGGAGGUCGU-GGACCaGcuaCCaCG- -5'
14024 5' -56.7 NC_003521.1 + 74459 0.66 0.941153
Target:  5'- gCACCgugUUCAGCGagcacguCCUGGgcuUCGAgcUGGUGCc -3'
miRNA:   3'- -GUGG---AGGUCGU-------GGACC---AGCU--ACCACG- -5'
14024 5' -56.7 NC_003521.1 + 75878 0.66 0.940251
Target:  5'- gGCCUUgAGCACCUGaUCGAaguacuugucggcgUGGauggGCa -3'
miRNA:   3'- gUGGAGgUCGUGGACcAGCU--------------ACCa---CG- -5'
14024 5' -56.7 NC_003521.1 + 188059 0.66 0.938882
Target:  5'- aCAUCUCCAuccugguuaacgaguGCgGCCUGGUCuucGGUGUa -3'
miRNA:   3'- -GUGGAGGU---------------CG-UGGACCAGcuaCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.