Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 153346 | 0.66 | 0.990876 |
Target: 5'- aCGUGuUCAGCagcuGGCAgaucuucUGGUGCCG-GCa -3' miRNA: 3'- cGCACcAGUUG----CCGU-------ACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 217641 | 0.66 | 0.988429 |
Target: 5'- gGCGUGGUCGgggggcAUGGCggGAU-CCGgggGUu -3' miRNA: 3'- -CGCACCAGU------UGCCGuaCUAcGGCa--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 112096 | 0.66 | 0.985334 |
Target: 5'- gGCGccaaGaUCAGCGGCGUGAUGgUGaGCa -3' miRNA: 3'- -CGCa---CcAGUUGCCGUACUACgGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 149744 | 0.66 | 0.989774 |
Target: 5'- aGUGgcaGGUCuucuGCGGCGaggGcgGCCGcGCg -3' miRNA: 3'- -CGCa--CCAGu---UGCCGUa--CuaCGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 117273 | 0.66 | 0.990993 |
Target: 5'- cCGccGUCGuCGGcCGUGGUGCCG-GCu -3' miRNA: 3'- cGCacCAGUuGCC-GUACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 127367 | 0.66 | 0.990993 |
Target: 5'- cCGUGGUgcGCGGCA-GGUG-CGUGa -3' miRNA: 3'- cGCACCAguUGCCGUaCUACgGCACg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 226310 | 0.66 | 0.98857 |
Target: 5'- gGCGUGGUgucguugaggaacaaGAUGuGCAUGGUGCgCGcGCc -3' miRNA: 3'- -CGCACCAg--------------UUGC-CGUACUACG-GCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 68676 | 0.66 | 0.990993 |
Target: 5'- aGCGUGGaagaGGCGGCcAUG-UGCCGc-- -3' miRNA: 3'- -CGCACCag--UUGCCG-UACuACGGCacg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 43470 | 0.67 | 0.983566 |
Target: 5'- aGCG-GGcCAgcGCGGCg----GCCGUGCu -3' miRNA: 3'- -CGCaCCaGU--UGCCGuacuaCGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 126272 | 0.67 | 0.981642 |
Target: 5'- aCGUGGUaCGugGuGC-UGAUGUCGcGCu -3' miRNA: 3'- cGCACCA-GUugC-CGuACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 147823 | 0.67 | 0.981642 |
Target: 5'- uCGUGcGg-AACuGCAcGGUGCCGUGCa -3' miRNA: 3'- cGCAC-CagUUGcCGUaCUACGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 85471 | 0.67 | 0.977294 |
Target: 5'- -gGUGGUCGu---CGUGGUGCCgGUGCc -3' miRNA: 3'- cgCACCAGUugccGUACUACGG-CACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 213960 | 0.67 | 0.981642 |
Target: 5'- cGgGUGGgCGcCGGCucgg-GCCGUGCu -3' miRNA: 3'- -CgCACCaGUuGCCGuacuaCGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 115256 | 0.67 | 0.981642 |
Target: 5'- cCGUGGUCGGgGGCAgcAUGcCCGUc- -3' miRNA: 3'- cGCACCAGUUgCCGUacUAC-GGCAcg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 112779 | 0.67 | 0.981642 |
Target: 5'- cGCGUcGGcCAcuucuaccgcguGCGGCGcgaGGUGCCGcGCa -3' miRNA: 3'- -CGCA-CCaGU------------UGCCGUa--CUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 199664 | 0.67 | 0.979554 |
Target: 5'- --uUGGUCauguagaugGugGGCGUcGAguaGCCGUGCa -3' miRNA: 3'- cgcACCAG---------UugCCGUA-CUa--CGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 123970 | 0.67 | 0.979554 |
Target: 5'- cGCGcaGGUCGucGCGGUcgGcgGCCGUc- -3' miRNA: 3'- -CGCa-CCAGU--UGCCGuaCuaCGGCAcg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 107749 | 0.67 | 0.979554 |
Target: 5'- aGUGUGGcggcugCGAUGGCuGUGAcUGCUGcUGCu -3' miRNA: 3'- -CGCACCa-----GUUGCCG-UACU-ACGGC-ACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 20381 | 0.67 | 0.977294 |
Target: 5'- cGUGUGG-CuGCGG-GUGuacGCCGUGCu -3' miRNA: 3'- -CGCACCaGuUGCCgUACua-CGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 72728 | 0.67 | 0.974856 |
Target: 5'- cGCGUGuUgGAgGGCAuccgaccggUGGUGCCGcGCu -3' miRNA: 3'- -CGCACcAgUUgCCGU---------ACUACGGCaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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