Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14035 | 3' | -53.6 | NC_003521.1 | + | 154538 | 0.68 | 0.95976 |
Target: 5'- uGCGUGaUCAcCGGCAccacggUGAUcGCCGcGCa -3' miRNA: 3'- -CGCACcAGUuGCCGU------ACUA-CGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 153426 | 0.72 | 0.844395 |
Target: 5'- gGCGUGGUCAGCaGCAgccgGUCGcGCu -3' miRNA: 3'- -CGCACCAGUUGcCGUacuaCGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 153346 | 0.66 | 0.990876 |
Target: 5'- aCGUGuUCAGCagcuGGCAgaucuucUGGUGCCG-GCa -3' miRNA: 3'- cGCACcAGUUG----CCGU-------ACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 151398 | 0.66 | 0.990993 |
Target: 5'- uGCGgggacgGGUaggGACGGCGUGuguauGUGCUgcuuGUGCg -3' miRNA: 3'- -CGCa-----CCAg--UUGCCGUAC-----UACGG----CACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 149744 | 0.66 | 0.989774 |
Target: 5'- aGUGgcaGGUCuucuGCGGCGaggGcgGCCGcGCg -3' miRNA: 3'- -CGCa--CCAGu---UGCCGUa--CuaCGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 147823 | 0.67 | 0.981642 |
Target: 5'- uCGUGcGg-AACuGCAcGGUGCCGUGCa -3' miRNA: 3'- cGCAC-CagUUGcCGUaCUACGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 145041 | 0.75 | 0.72864 |
Target: 5'- cGCGUGGcCgAGCGGCAcGAUGaCCGUcuggGCg -3' miRNA: 3'- -CGCACCaG-UUGCCGUaCUAC-GGCA----CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 144698 | 0.66 | 0.989774 |
Target: 5'- aCGUGGaggCAAC-GCGg---GCCGUGCa -3' miRNA: 3'- cGCACCa--GUUGcCGUacuaCGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 144194 | 0.68 | 0.95976 |
Target: 5'- cGCGcUGGagAACGGCAaGcUGCagcaGUGCg -3' miRNA: 3'- -CGC-ACCagUUGCCGUaCuACGg---CACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 139756 | 0.69 | 0.952264 |
Target: 5'- cGCGUGc-CGACGGCAgGAUccgGCCGUcgGCg -3' miRNA: 3'- -CGCACcaGUUGCCGUaCUA---CGGCA--CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 137997 | 0.74 | 0.775798 |
Target: 5'- cGCGcaGGUCGAucuCGGCGUcgaGGUGCgCGUGCg -3' miRNA: 3'- -CGCa-CCAGUU---GCCGUA---CUACG-GCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 131315 | 0.7 | 0.929608 |
Target: 5'- ----cGUCGGCGGCGUcaccugGCCGUGCa -3' miRNA: 3'- cgcacCAGUUGCCGUAcua---CGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 130128 | 0.68 | 0.95976 |
Target: 5'- uGCGUcGUCGGCGGCGcc--GCCGcUGCc -3' miRNA: 3'- -CGCAcCAGUUGCCGUacuaCGGC-ACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 129282 | 0.71 | 0.887613 |
Target: 5'- cCGUGGUCAGCuuguugaggucguGGaacuUGAUGgCGUGCg -3' miRNA: 3'- cGCACCAGUUG-------------CCgu--ACUACgGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 128464 | 0.79 | 0.491903 |
Target: 5'- gGCGgaucacguccaUGGgCAGCGGCGUGAgGCUGUGCg -3' miRNA: 3'- -CGC-----------ACCaGUUGCCGUACUaCGGCACG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 128324 | 0.66 | 0.989774 |
Target: 5'- aGCGgauaaaggGGUCGuuCuGCGUGAUGCCGa-- -3' miRNA: 3'- -CGCa-------CCAGUu-GcCGUACUACGGCacg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 127367 | 0.66 | 0.990993 |
Target: 5'- cCGUGGUgcGCGGCA-GGUG-CGUGa -3' miRNA: 3'- cGCACCAguUGCCGUaCUACgGCACg -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 127323 | 0.74 | 0.766579 |
Target: 5'- gGCGuUGGUCAGCGGC----UGCCGgucgGCc -3' miRNA: 3'- -CGC-ACCAGUUGCCGuacuACGGCa---CG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 126272 | 0.67 | 0.981642 |
Target: 5'- aCGUGGUaCGugGuGC-UGAUGUCGcGCu -3' miRNA: 3'- cGCACCA-GUugC-CGuACUACGGCaCG- -5' |
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14035 | 3' | -53.6 | NC_003521.1 | + | 124026 | 0.73 | 0.811348 |
Target: 5'- cGCgGUGcGUCAGCGGCugcuUGgcGuuGUGCu -3' miRNA: 3'- -CG-CAC-CAGUUGCCGu---ACuaCggCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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