miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14035 3' -53.6 NC_003521.1 + 177525 0.69 0.939354
Target:  5'- -gGUGGUUGAUGGCGUGGaucagcaGCUGcUGCa -3'
miRNA:   3'- cgCACCAGUUGCCGUACUa------CGGC-ACG- -5'
14035 3' -53.6 NC_003521.1 + 210429 0.74 0.775798
Target:  5'- gGCGUGGgcggCGACGGCAgcGUaCUGUGCu -3'
miRNA:   3'- -CGCACCa---GUUGCCGUacUAcGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 68386 0.67 0.977294
Target:  5'- aGCGaGGUgGACGcCGUGAgaUGCCGgcuggGCa -3'
miRNA:   3'- -CGCaCCAgUUGCcGUACU--ACGGCa----CG- -5'
14035 3' -53.6 NC_003521.1 + 40419 0.74 0.767506
Target:  5'- gGCGUGcagggaggccgaagCGGCGGCcgGA-GCCGUGCa -3'
miRNA:   3'- -CGCACca------------GUUGCCGuaCUaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 196221 0.66 0.992094
Target:  5'- aGCGUGuGUCGcaGCuGCA-GGUGUCGcGCg -3'
miRNA:   3'- -CGCAC-CAGU--UGcCGUaCUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 87277 0.73 0.811348
Target:  5'- cGCGUGGcCAACGGgccCGaGGUGCgCGUGUu -3'
miRNA:   3'- -CGCACCaGUUGCC---GUaCUACG-GCACG- -5'
14035 3' -53.6 NC_003521.1 + 203335 0.72 0.867255
Target:  5'- aGCGUGG-CGAUGGg--GGUGCCcUGCg -3'
miRNA:   3'- -CGCACCaGUUGCCguaCUACGGcACG- -5'
14035 3' -53.6 NC_003521.1 + 166619 0.66 0.986952
Target:  5'- aCGUGGcagaaGACGGCGUcggGCCGcGCg -3'
miRNA:   3'- cGCACCag---UUGCCGUAcuaCGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 112096 0.66 0.985334
Target:  5'- gGCGccaaGaUCAGCGGCGUGAUGgUGaGCa -3'
miRNA:   3'- -CGCa---CcAGUUGCCGUACUACgGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 164554 0.67 0.981642
Target:  5'- cGCGaGGUCuc--GCAgGcgGCCGUGCg -3'
miRNA:   3'- -CGCaCCAGuugcCGUaCuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 123970 0.67 0.979554
Target:  5'- cGCGcaGGUCGucGCGGUcgGcgGCCGUc- -3'
miRNA:   3'- -CGCa-CCAGU--UGCCGuaCuaCGGCAcg -5'
14035 3' -53.6 NC_003521.1 + 165611 0.66 0.992094
Target:  5'- uCGUGGUUGGCGGCGUGcagaAUGuaGUa- -3'
miRNA:   3'- cGCACCAGUUGCCGUAC----UACggCAcg -5'
14035 3' -53.6 NC_003521.1 + 205348 0.68 0.966403
Target:  5'- ---cGG-CGGCGGCAgcugcGCCGUGCa -3'
miRNA:   3'- cgcaCCaGUUGCCGUacua-CGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 16704 0.69 0.956121
Target:  5'- aUGUGGcaGACGcGCGUGAUGCgCG-GCg -3'
miRNA:   3'- cGCACCagUUGC-CGUACUACG-GCaCG- -5'
14035 3' -53.6 NC_003521.1 + 122727 0.69 0.952264
Target:  5'- uCGUGGUCGugGGCGacGgcGCCGccgaugGCu -3'
miRNA:   3'- cGCACCAGUugCCGUa-CuaCGGCa-----CG- -5'
14035 3' -53.6 NC_003521.1 + 183973 0.69 0.939354
Target:  5'- cCGUGGgCuuCGaCAaGAUGCCGUGCu -3'
miRNA:   3'- cGCACCaGuuGCcGUaCUACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 22353 0.7 0.918941
Target:  5'- cCGgGGcCAcugcgcccACGGCGUGGUGCCG-GCc -3'
miRNA:   3'- cGCaCCaGU--------UGCCGUACUACGGCaCG- -5'
14035 3' -53.6 NC_003521.1 + 33908 0.7 0.907355
Target:  5'- uGCaUGGUCAacGCGGUgaucuucacaugGUGcUGCUGUGCg -3'
miRNA:   3'- -CGcACCAGU--UGCCG------------UACuACGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 144698 0.66 0.989774
Target:  5'- aCGUGGaggCAAC-GCGg---GCCGUGCa -3'
miRNA:   3'- cGCACCa--GUUGcCGUacuaCGGCACG- -5'
14035 3' -53.6 NC_003521.1 + 154538 0.68 0.95976
Target:  5'- uGCGUGaUCAcCGGCAccacggUGAUcGCCGcGCa -3'
miRNA:   3'- -CGCACcAGUuGCCGU------ACUA-CGGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.