miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 3' -54.9 NC_003521.1 + 166081 0.66 0.981097
Target:  5'- cCGCAGggcCAUaGCGGGAGCGGGc- -3'
miRNA:   3'- uGUGUCagaGUAgUGCCCUUGCCCcu -5'
14038 3' -54.9 NC_003521.1 + 204643 0.66 0.978981
Target:  5'- cACACGGgggUUUAuUCACaGGGGAaGGGGAa -3'
miRNA:   3'- -UGUGUCa--GAGU-AGUG-CCCUUgCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 5621 0.66 0.978981
Target:  5'- cACAUgaGGaUCcCGUCGCGGGAACGGa-- -3'
miRNA:   3'- -UGUG--UC-AGaGUAGUGCCCUUGCCccu -5'
14038 3' -54.9 NC_003521.1 + 34273 0.66 0.976694
Target:  5'- cUAUcGUCcUGUCACGGGGGCGGGc- -3'
miRNA:   3'- uGUGuCAGaGUAGUGCCCUUGCCCcu -5'
14038 3' -54.9 NC_003521.1 + 69729 0.66 0.976694
Target:  5'- uACGCGGUa-----ACGGcGGGCGGGGAg -3'
miRNA:   3'- -UGUGUCAgaguagUGCC-CUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 131085 0.66 0.976694
Target:  5'- cCGCGG-CUCG-CGCGGGcuccggacGGCGGGGc -3'
miRNA:   3'- uGUGUCaGAGUaGUGCCC--------UUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 229399 0.66 0.976694
Target:  5'- gACACGG----GUgGCGGGuACGGGGAc -3'
miRNA:   3'- -UGUGUCagagUAgUGCCCuUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 164784 0.66 0.97423
Target:  5'- gACGCGG-Cggg-CACGGGucguCGGGGAc -3'
miRNA:   3'- -UGUGUCaGaguaGUGCCCuu--GCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 178914 0.66 0.971581
Target:  5'- -aGCGGUCaccCAUCACgucgGGGAACGGcGGc -3'
miRNA:   3'- ugUGUCAGa--GUAGUG----CCCUUGCC-CCu -5'
14038 3' -54.9 NC_003521.1 + 217838 0.66 0.971581
Target:  5'- -gAguGUgUCGUCucuCGGGGGgGGGGGg -3'
miRNA:   3'- ugUguCAgAGUAGu--GCCCUUgCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 40806 0.67 0.965708
Target:  5'- gGCGCGGUCagCuauUCGCcucGGGGCGGGGc -3'
miRNA:   3'- -UGUGUCAGa-Gu--AGUGc--CCUUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 149683 0.67 0.96379
Target:  5'- cCACGGUaacugaucgcgagUAUUACGGGAugcCGGGGAa -3'
miRNA:   3'- uGUGUCAga-----------GUAGUGCCCUu--GCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 10453 0.67 0.962471
Target:  5'- gGCACGugcGUUUUcgaacuCGGGGACGGGGAu -3'
miRNA:   3'- -UGUGU---CAGAGuagu--GCCCUUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 27853 0.67 0.962471
Target:  5'- cCGCGGUCUCGUaACGGc-ACGGaGGAc -3'
miRNA:   3'- uGUGUCAGAGUAgUGCCcuUGCC-CCU- -5'
14038 3' -54.9 NC_003521.1 + 138179 0.67 0.962471
Target:  5'- cGCGCcucuGUCUCGauggcCugGGGcAACGGGGu -3'
miRNA:   3'- -UGUGu---CAGAGUa----GugCCC-UUGCCCCu -5'
14038 3' -54.9 NC_003521.1 + 235825 0.67 0.953078
Target:  5'- aGCGCGucagcGUCUgA-CGCGGGAuggugaggacaccacACGGGGAg -3'
miRNA:   3'- -UGUGU-----CAGAgUaGUGCCCU---------------UGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 236125 0.67 0.951504
Target:  5'- -gACuGUUUCGggACGGGA-CGGGGGg -3'
miRNA:   3'- ugUGuCAGAGUagUGCCCUuGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 43215 0.68 0.947417
Target:  5'- uUACuGUCacgCGUUAcCGGGcAGCGGGGAa -3'
miRNA:   3'- uGUGuCAGa--GUAGU-GCCC-UUGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 105294 0.68 0.943108
Target:  5'- aGCGCG--UUCAUgGCGGGcgUGGGGAc -3'
miRNA:   3'- -UGUGUcaGAGUAgUGCCCuuGCCCCU- -5'
14038 3' -54.9 NC_003521.1 + 238358 0.68 0.943108
Target:  5'- gGCGCcGUCgCGUacccauaGCGGGGcGCGGGGAu -3'
miRNA:   3'- -UGUGuCAGaGUAg------UGCCCU-UGCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.