miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14038 5' -58.8 NC_003521.1 + 121310 0.66 0.876982
Target:  5'- --aCCCg--UACCCGCAccugacccGGCauGGCGACa -3'
miRNA:   3'- uaaGGGaugAUGGGCGU--------CCG--CCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 187596 0.66 0.876982
Target:  5'- -cUUUCUGCUGCCgGUGGGCacggccugccgGGCGAg -3'
miRNA:   3'- uaAGGGAUGAUGGgCGUCCG-----------CCGCUg -5'
14038 5' -58.8 NC_003521.1 + 128821 0.66 0.876982
Target:  5'- uUUCCCggugggGCUCGUAGaCGGCGAUg -3'
miRNA:   3'- uAAGGGauga--UGGGCGUCcGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 62976 0.66 0.876289
Target:  5'- -gUCCUuuuuUugUACCCGCAGGCuguacuuGGaaucaGACg -3'
miRNA:   3'- uaAGGG----AugAUGGGCGUCCG-------CCg----CUG- -5'
14038 5' -58.8 NC_003521.1 + 127655 0.66 0.876289
Target:  5'- --aCCUcGCgGCCCaucuuggccgcgaGCAGGCGGCGGg -3'
miRNA:   3'- uaaGGGaUGaUGGG-------------CGUCCGCCGCUg -5'
14038 5' -58.8 NC_003521.1 + 116552 0.66 0.872794
Target:  5'- --gCCCU-CUcgcGCCCGCAgacaccaagcaugccGcGCGGCGACc -3'
miRNA:   3'- uaaGGGAuGA---UGGGCGU---------------C-CGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 84162 0.66 0.869963
Target:  5'- -cUCCaCgucCUcCCCGUacAGGUGGCGACu -3'
miRNA:   3'- uaAGG-Gau-GAuGGGCG--UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 122643 0.66 0.869963
Target:  5'- --cCCCgACUuuGCCgGCGGGCGucgucuGCGGCg -3'
miRNA:   3'- uaaGGGaUGA--UGGgCGUCCGC------CGCUG- -5'
14038 5' -58.8 NC_003521.1 + 19726 0.66 0.869963
Target:  5'- --aCgCUGCUgACCaGCGuGGCGGUGACg -3'
miRNA:   3'- uaaGgGAUGA-UGGgCGU-CCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 113740 0.66 0.869963
Target:  5'- --gCCCgACguuCCUGCuGGCGGCuGACc -3'
miRNA:   3'- uaaGGGaUGau-GGGCGuCCGCCG-CUG- -5'
14038 5' -58.8 NC_003521.1 + 130482 0.66 0.869963
Target:  5'- --gCCCaGCUACaCCGCgAGcGCGGCcGCg -3'
miRNA:   3'- uaaGGGaUGAUG-GGCG-UC-CGCCGcUG- -5'
14038 5' -58.8 NC_003521.1 + 16280 0.66 0.869963
Target:  5'- -gUUCCUGCUggGCgCCGUGGGUgccuaccggcccGGCGGCu -3'
miRNA:   3'- uaAGGGAUGA--UG-GGCGUCCG------------CCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 29736 0.66 0.869963
Target:  5'- -aUCCCUccaguccCCCGcCGGGCaacGGCGACa -3'
miRNA:   3'- uaAGGGAugau---GGGC-GUCCG---CCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 136154 0.66 0.869963
Target:  5'- --cCCCUcgaGCU-CCgCGUuuuccgaagAGGCGGCGGCg -3'
miRNA:   3'- uaaGGGA---UGAuGG-GCG---------UCCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 232194 0.66 0.869963
Target:  5'- -cUCCC-ACgccaugggccCCCGCGGGUGGUGGu -3'
miRNA:   3'- uaAGGGaUGau--------GGGCGUCCGCCGCUg -5'
14038 5' -58.8 NC_003521.1 + 89432 0.66 0.869963
Target:  5'- -gUCCCUACccgucCCCGCAGaaCGGCGu- -3'
miRNA:   3'- uaAGGGAUGau---GGGCGUCc-GCCGCug -5'
14038 5' -58.8 NC_003521.1 + 207917 0.66 0.869963
Target:  5'- ---aCCUACg--CCGgGGGCGGCGGg -3'
miRNA:   3'- uaagGGAUGaugGGCgUCCGCCGCUg -5'
14038 5' -58.8 NC_003521.1 + 114924 0.66 0.86925
Target:  5'- -gUCCCUcgagcgGCUGCUggagagcugcucgCGCA-GCGGCGGCu -3'
miRNA:   3'- uaAGGGA------UGAUGG-------------GCGUcCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 237165 0.66 0.862745
Target:  5'- -gUCCCgGCcGCCgagGCAgacGGCGGCGGCc -3'
miRNA:   3'- uaAGGGaUGaUGGg--CGU---CCGCCGCUG- -5'
14038 5' -58.8 NC_003521.1 + 25530 0.66 0.862745
Target:  5'- ---aCCUGCcg-CCGCuGGCGGUGGCc -3'
miRNA:   3'- uaagGGAUGaugGGCGuCCGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.