miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 167668 0.66 0.483912
Target:  5'- -gGUCgcaggCCGAGgCGGcGCCGCCGccgcuGCCCc -3'
miRNA:   3'- aaCAGg----GGCUCgGCC-CGGCGGC-----CGGG- -5'
14058 5' -67.6 NC_003521.1 + 164002 0.67 0.466922
Target:  5'- -cGUCCUCu--UCGGGCCgaGCCGGUCCc -3'
miRNA:   3'- aaCAGGGGcucGGCCCGG--CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 158051 0.68 0.402278
Target:  5'- -cGUCCCUGuGCUccacGGcCCGCCGGUCg -3'
miRNA:   3'- aaCAGGGGCuCGGc---CC-GGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 155336 0.66 0.509935
Target:  5'- -gGUCCCggcggGGGCgCGGGCa-CCGGCaCCa -3'
miRNA:   3'- aaCAGGGg----CUCG-GCCCGgcGGCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 154925 0.66 0.518741
Target:  5'- cUGaCCaaGAGUCGGGUCauGUCGGCCUu -3'
miRNA:   3'- aACaGGggCUCGGCCCGG--CGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 154426 0.68 0.379542
Target:  5'- -cGUcCCCCGcGUCGa-CCGCUGGCCCu -3'
miRNA:   3'- aaCA-GGGGCuCGGCccGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 153477 0.66 0.509058
Target:  5'- --cUCCUCGGGCuccggcuCGGGCCGuCUGGUCa -3'
miRNA:   3'- aacAGGGGCUCG-------GCCCGGC-GGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 153083 0.69 0.364869
Target:  5'- -gGggCCCGGGCCGGggcccaccacGCCGCCGGgCg -3'
miRNA:   3'- aaCagGGGCUCGGCC----------CGGCGGCCgGg -5'
14058 5' -67.6 NC_003521.1 + 152144 1.08 0.000543
Target:  5'- uUUGUCCCCGAGCCGGGCCGCCGGCCCa -3'
miRNA:   3'- -AACAGGGGCUCGGCCCGGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 151649 0.68 0.372156
Target:  5'- -cGUCCagcaGGGCCaGGCC-CaCGGCCCa -3'
miRNA:   3'- aaCAGGgg--CUCGGcCCGGcG-GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 151619 0.72 0.228941
Target:  5'- gUGUCCCCGguuAGCaauucuucuCCGCCGGCCCg -3'
miRNA:   3'- aACAGGGGC---UCGgccc-----GGCGGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 151098 0.71 0.273425
Target:  5'- ---cCCUCGGGUCGGGCCGCUGGg-- -3'
miRNA:   3'- aacaGGGGCUCGGCCCGGCGGCCggg -5'
14058 5' -67.6 NC_003521.1 + 149531 0.66 0.527605
Target:  5'- --cUCUUCGAGUCGGGCgGCgCGcGCUCc -3'
miRNA:   3'- aacAGGGGCUCGGCCCGgCG-GC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 149053 0.66 0.509935
Target:  5'- -cGUgCCCGcGCUGGGCUucgacgcgGCCGcGCUCu -3'
miRNA:   3'- aaCAgGGGCuCGGCCCGG--------CGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 148623 0.67 0.442031
Target:  5'- -cGUCgCgCG-GCCGGGCgGCgaaaaaCGGCCCc -3'
miRNA:   3'- aaCAGgG-GCuCGGCCCGgCG------GCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 145857 0.67 0.442031
Target:  5'- -cGUCUCUGGGCCcGGCgGCgggCGGCgCCg -3'
miRNA:   3'- aaCAGGGGCUCGGcCCGgCG---GCCG-GG- -5'
14058 5' -67.6 NC_003521.1 + 144872 0.66 0.518741
Target:  5'- -gGUCCCCGAaccGCauccgugaGGGCUcugauCCGGCUCg -3'
miRNA:   3'- aaCAGGGGCU---CGg-------CCCGGc----GGCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 142558 0.69 0.343607
Target:  5'- cUUGUCgCCC--GCCaGGCuCGCCGuGCCCg -3'
miRNA:   3'- -AACAG-GGGcuCGGcCCG-GCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 142275 0.66 0.527605
Target:  5'- -cGggCUCGGGCUGGGacCCGCCgccgcugcagcGGCCCa -3'
miRNA:   3'- aaCagGGGCUCGGCCC--GGCGG-----------CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 138057 0.66 0.52494
Target:  5'- -gGUCgCCCGcgaccgccgcggacAGCUGaGG-CGCUGGCCCu -3'
miRNA:   3'- aaCAG-GGGC--------------UCGGC-CCgGCGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.