miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14058 5' -67.6 NC_003521.1 + 74098 0.69 0.353417
Target:  5'- --uUCCCCGccaaggaugauagcuGGCUGuGGCCGCUGGUCa -3'
miRNA:   3'- aacAGGGGC---------------UCGGC-CCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 29707 0.7 0.285277
Target:  5'- -cGUCCUCGGcGCCuGGCUGCUGaGCCUc -3'
miRNA:   3'- aaCAGGGGCU-CGGcCCGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 186328 0.79 0.075325
Target:  5'- -gGUCCac--GCCGGGCCGCCGGCCa -3'
miRNA:   3'- aaCAGGggcuCGGCCCGGCGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 196456 0.69 0.350594
Target:  5'- -cGgCCUCGGGCgUGGGCCGCa-GCCCc -3'
miRNA:   3'- aaCaGGGGCUCG-GCCCGGCGgcCGGG- -5'
14058 5' -67.6 NC_003521.1 + 107067 0.86 0.022629
Target:  5'- -cGUCCCCGGaaucGCCGGGCCuGCCGGCCa -3'
miRNA:   3'- aaCAGGGGCU----CGGCCCGG-CGGCCGGg -5'
14058 5' -67.6 NC_003521.1 + 2367 0.67 0.458544
Target:  5'- -cG-CCCCGcccGCCGaGGCCGCCcugcGCCUc -3'
miRNA:   3'- aaCaGGGGCu--CGGC-CCGGCGGc---CGGG- -5'
14058 5' -67.6 NC_003521.1 + 11925 0.76 0.115778
Target:  5'- -aGUCCCCcAGCCGGGCCcgGCUGGUgCu -3'
miRNA:   3'- aaCAGGGGcUCGGCCCGG--CGGCCGgG- -5'
14058 5' -67.6 NC_003521.1 + 188470 0.67 0.450246
Target:  5'- -cGcCUCCGAGCUacgagcaGGCCGUgGGCCUg -3'
miRNA:   3'- aaCaGGGGCUCGGc------CCGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 1439 0.67 0.433902
Target:  5'- cUGggCCgCGAGCUGcGCCGCCGGUg- -3'
miRNA:   3'- aACa-GGgGCUCGGCcCGGCGGCCGgg -5'
14058 5' -67.6 NC_003521.1 + 101557 0.68 0.410047
Target:  5'- cUGUCCCUGAGuCCGaaaGCUGUCGaGUCCc -3'
miRNA:   3'- aACAGGGGCUC-GGCc--CGGCGGC-CGGG- -5'
14058 5' -67.6 NC_003521.1 + 48366 0.68 0.402278
Target:  5'- -cGUCCUgGAaaCCGGcGCCGCCGccauGCCCc -3'
miRNA:   3'- aaCAGGGgCUc-GGCC-CGGCGGC----CGGG- -5'
14058 5' -67.6 NC_003521.1 + 167832 0.68 0.379542
Target:  5'- ---cCCCCGGGCaCGaccGCCGCgGGCUCg -3'
miRNA:   3'- aacaGGGGCUCG-GCc--CGGCGgCCGGG- -5'
14058 5' -67.6 NC_003521.1 + 179454 0.68 0.379542
Target:  5'- -gGUCCuuGAGCuguugcaggaagCGGGCCGUgGGCa- -3'
miRNA:   3'- aaCAGGggCUCG------------GCCCGGCGgCCGgg -5'
14058 5' -67.6 NC_003521.1 + 185570 0.69 0.343607
Target:  5'- uUUGUCCCCc-G-CGGGCuCGCCGGCgagCCg -3'
miRNA:   3'- -AACAGGGGcuCgGCCCG-GCGGCCG---GG- -5'
14058 5' -67.6 NC_003521.1 + 187620 0.69 0.329262
Target:  5'- cUG-CCgggCGAGCCGGGCCGCgcgccgcUGGCCa -3'
miRNA:   3'- aACaGGg--GCUCGGCCCGGCG-------GCCGGg -5'
14058 5' -67.6 NC_003521.1 + 135181 0.7 0.310188
Target:  5'- ---cCCCCGAGCUGGGCuucaCGCacacGCCCg -3'
miRNA:   3'- aacaGGGGCUCGGCCCG----GCGgc--CGGG- -5'
14058 5' -67.6 NC_003521.1 + 196279 0.7 0.303176
Target:  5'- -cGUCCUcaugugagcgCGuGCCGGGCCGCUugaugcuGGCCa -3'
miRNA:   3'- aaCAGGG----------GCuCGGCCCGGCGG-------CCGGg -5'
14058 5' -67.6 NC_003521.1 + 100751 0.71 0.273425
Target:  5'- ---aCCCCGAGCUGGGCCuggcgcacucguGCaacgaGGCCUu -3'
miRNA:   3'- aacaGGGGCUCGGCCCGG------------CGg----CCGGG- -5'
14058 5' -67.6 NC_003521.1 + 16807 0.72 0.215213
Target:  5'- -cG-CCCCGAccGCCGGGcCCGCCGcuGCCg -3'
miRNA:   3'- aaCaGGGGCU--CGGCCC-GGCGGC--CGGg -5'
14058 5' -67.6 NC_003521.1 + 89160 0.73 0.201294
Target:  5'- ---aCCCUGgacGGCUGGGCCGUgGGCCUg -3'
miRNA:   3'- aacaGGGGC---UCGGCCCGGCGgCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.