miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14060 3' -60.5 NC_003521.1 + 91251 0.66 0.886899
Target:  5'- -gGCCCU--CGGGGUcCCG--UCCGGg -3'
miRNA:   3'- ggCGGGGagGCCCCAuGGCauAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 209930 0.66 0.886899
Target:  5'- uUCGUUCC-CCcaGGUACCGUAgacCCGGg -3'
miRNA:   3'- -GGCGGGGaGGccCCAUGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 118838 0.66 0.880509
Target:  5'- gCUGCCCgUCaGGGGUACCagguUGUCUa- -3'
miRNA:   3'- -GGCGGGgAGgCCCCAUGGc---AUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 61762 0.66 0.880509
Target:  5'- gCCGuuCCCCgucaCCGGGaccgccGCCGgcUCCGGc -3'
miRNA:   3'- -GGC--GGGGa---GGCCCca----UGGCauAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 31750 0.66 0.873932
Target:  5'- uCCGCCgCCUCgaccggcacauCGGGGUcgcGCCaGUcgCCGc -3'
miRNA:   3'- -GGCGG-GGAG-----------GCCCCA---UGG-CAuaGGCc -5'
14060 3' -60.5 NC_003521.1 + 217627 0.66 0.873932
Target:  5'- gCCGCCaUCUCCucggcguggucgGGGGgcaugGCgGgAUCCGGg -3'
miRNA:   3'- -GGCGG-GGAGG------------CCCCa----UGgCaUAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 240476 0.66 0.873932
Target:  5'- gCGCCgCCUCCGGcagcucacgcuuGGUugGCCGUuugcacgCUGGg -3'
miRNA:   3'- gGCGG-GGAGGCC------------CCA--UGGCAua-----GGCC- -5'
14060 3' -60.5 NC_003521.1 + 117266 0.66 0.873932
Target:  5'- cCCGCCaCCgCCGucGUcgGCCGUGgugCCGGc -3'
miRNA:   3'- -GGCGG-GGaGGCccCA--UGGCAUa--GGCC- -5'
14060 3' -60.5 NC_003521.1 + 52153 0.66 0.873932
Target:  5'- cCCGCCCgUCagcgacGGUACCGcggGUCCGc -3'
miRNA:   3'- -GGCGGGgAGgcc---CCAUGGCa--UAGGCc -5'
14060 3' -60.5 NC_003521.1 + 149419 0.66 0.867174
Target:  5'- gUCGCCCUgugggCCGGGauuuGggUCGgggGUCCGGg -3'
miRNA:   3'- -GGCGGGGa----GGCCC----CauGGCa--UAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 209548 0.66 0.853845
Target:  5'- aUGCgCCCggCGGGGUGgCGgcgacgguggcggggGUCCGGg -3'
miRNA:   3'- gGCG-GGGagGCCCCAUgGCa--------------UAGGCC- -5'
14060 3' -60.5 NC_003521.1 + 148702 0.66 0.853127
Target:  5'- cCCGCCCgaaccgcacCCGGGGguuCCGac-CCGGg -3'
miRNA:   3'- -GGCGGGga-------GGCCCCau-GGCauaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 144859 0.66 0.853127
Target:  5'- aUCGCUCC-CCGcGGGUccccgaACCGcAUCCGu -3'
miRNA:   3'- -GGCGGGGaGGC-CCCA------UGGCaUAGGCc -5'
14060 3' -60.5 NC_003521.1 + 203327 0.66 0.853126
Target:  5'- uCCGCgggCCCgaaaacgCCGGGGggcagACCGcGUCCa- -3'
miRNA:   3'- -GGCG---GGGa------GGCCCCa----UGGCaUAGGcc -5'
14060 3' -60.5 NC_003521.1 + 90341 0.66 0.853126
Target:  5'- aCGCCCC-CUGGcaGGgcuauacACCGUA-CCGGa -3'
miRNA:   3'- gGCGGGGaGGCC--CCa------UGGCAUaGGCC- -5'
14060 3' -60.5 NC_003521.1 + 150268 0.66 0.853126
Target:  5'- aCCGCggccggCCUCuCGuGGGUGCUGUcgCgGGg -3'
miRNA:   3'- -GGCGg-----GGAG-GC-CCCAUGGCAuaGgCC- -5'
14060 3' -60.5 NC_003521.1 + 190006 0.67 0.848779
Target:  5'- aCCGCUCCcaccaCCGGGGacaccgcugccaucACCGUcgCCGa -3'
miRNA:   3'- -GGCGGGGa----GGCCCCa-------------UGGCAuaGGCc -5'
14060 3' -60.5 NC_003521.1 + 53536 0.67 0.838405
Target:  5'- gCUGUCCgCUCCGGgucgaGGUGCCGcUGUCgCGu -3'
miRNA:   3'- -GGCGGG-GAGGCC-----CCAUGGC-AUAG-GCc -5'
14060 3' -60.5 NC_003521.1 + 98875 0.67 0.838405
Target:  5'- aCCGCCgCUCgugcuaGGGGgcGCCGUcGUCgCGGc -3'
miRNA:   3'- -GGCGGgGAGg-----CCCCa-UGGCA-UAG-GCC- -5'
14060 3' -60.5 NC_003521.1 + 153074 0.67 0.830804
Target:  5'- uCCGCCg--CCGGGGc-CCGgg-CCGGg -3'
miRNA:   3'- -GGCGGggaGGCCCCauGGCauaGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.