miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14063 5' -49.5 NC_003521.1 + 96791 0.66 0.999829
Target:  5'- aGCGcCGCAgaccggaacggggaaGCGCGCGUGUGGguugcacACCa -3'
miRNA:   3'- -UGU-GCGUa--------------UGCGCGCAUAUCau-----UGGc -5'
14063 5' -49.5 NC_003521.1 + 166893 0.66 0.999825
Target:  5'- --cCGCGgGCGCGCGggGUAGgugAACUGc -3'
miRNA:   3'- uguGCGUaUGCGCGCa-UAUCa--UUGGC- -5'
14063 5' -49.5 NC_003521.1 + 179368 0.66 0.999825
Target:  5'- cACcUGCuugACGCGCGUGcGGaUGACCu -3'
miRNA:   3'- -UGuGCGua-UGCGCGCAUaUC-AUUGGc -5'
14063 5' -49.5 NC_003521.1 + 55613 0.66 0.999816
Target:  5'- uACACGCAguccCGCGCGgcccac-ACCGa -3'
miRNA:   3'- -UGUGCGUau--GCGCGCauaucauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 90083 0.66 0.999797
Target:  5'- gGCGCGCAcGCGCGCGguaaaaaagAAgCGg -3'
miRNA:   3'- -UGUGCGUaUGCGCGCauauca---UUgGC- -5'
14063 5' -49.5 NC_003521.1 + 197595 0.66 0.999777
Target:  5'- aGCGCGCccaauGUGCG-GCGUcUGGUGcagcagGCCGa -3'
miRNA:   3'- -UGUGCG-----UAUGCgCGCAuAUCAU------UGGC- -5'
14063 5' -49.5 NC_003521.1 + 212240 0.66 0.999777
Target:  5'- uGCGCaGCAgccCGCcguccGCGUAgucGGUGGCCGg -3'
miRNA:   3'- -UGUG-CGUau-GCG-----CGCAUa--UCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 145020 0.66 0.999777
Target:  5'- gACAuCGCcgACGCGCuGgaucgcGUGGCCGa -3'
miRNA:   3'- -UGU-GCGuaUGCGCG-Cauau--CAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 78999 0.66 0.999777
Target:  5'- gGCACGg--GC-CGCGUAccGUAGCCGu -3'
miRNA:   3'- -UGUGCguaUGcGCGCAUauCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 128785 0.66 0.999718
Target:  5'- gGCGuCGCAgUACGCG-GUcgGGgcACCGc -3'
miRNA:   3'- -UGU-GCGU-AUGCGCgCAuaUCauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 180211 0.66 0.999718
Target:  5'- uCGCGCucggcguuggugGUGcCGCGCGUGUGGgccucgAACUGc -3'
miRNA:   3'- uGUGCG------------UAU-GCGCGCAUAUCa-----UUGGC- -5'
14063 5' -49.5 NC_003521.1 + 137508 0.66 0.999698
Target:  5'- gGCGCGUcaGCGCcugcuggaguaccgGCGcGUGGUGGCCu -3'
miRNA:   3'- -UGUGCGuaUGCG--------------CGCaUAUCAUUGGc -5'
14063 5' -49.5 NC_003521.1 + 218250 0.66 0.999647
Target:  5'- uCACGgGUGCGaCGCGUcaGGaacaUGACCGu -3'
miRNA:   3'- uGUGCgUAUGC-GCGCAuaUC----AUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 128037 0.66 0.999647
Target:  5'- uCGCGCcgcACGCG-GUAgaAGUGGCCGa -3'
miRNA:   3'- uGUGCGua-UGCGCgCAUa-UCAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 115485 0.66 0.999647
Target:  5'- aACA-GCGUGgGcCGCGUGUcgcucuGUGGCCGg -3'
miRNA:   3'- -UGUgCGUAUgC-GCGCAUAu-----CAUUGGC- -5'
14063 5' -49.5 NC_003521.1 + 191379 0.66 0.999559
Target:  5'- aGCGCGCAgACG-GCGUGgag-GACCa -3'
miRNA:   3'- -UGUGCGUaUGCgCGCAUaucaUUGGc -5'
14063 5' -49.5 NC_003521.1 + 147442 0.67 0.999454
Target:  5'- aACAgGC-UGCGCGCGcgGaAGUAGCgGa -3'
miRNA:   3'- -UGUgCGuAUGCGCGCa-UaUCAUUGgC- -5'
14063 5' -49.5 NC_003521.1 + 90902 0.67 0.999454
Target:  5'- -nGCGCAUGCGUcgGCGUcgGuGUuguuGCCGg -3'
miRNA:   3'- ugUGCGUAUGCG--CGCAuaU-CAu---UGGC- -5'
14063 5' -49.5 NC_003521.1 + 178704 0.67 0.999454
Target:  5'- cACACGCAUugGUuccccGCGc--GGgcGCCGa -3'
miRNA:   3'- -UGUGCGUAugCG-----CGCauaUCauUGGC- -5'
14063 5' -49.5 NC_003521.1 + 174168 0.67 0.999327
Target:  5'- cGCAUGCAgaucuccuggaUGCGaCGCGUcAUGGUGcucACCa -3'
miRNA:   3'- -UGUGCGU-----------AUGC-GCGCA-UAUCAU---UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.