miRNA display CGI


Results 1 - 20 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14065 5' -54.8 NC_003521.1 + 155828 0.66 0.98791
Target:  5'- uCCGGAgGUGGugG-CGCAgaaccgUACGCa- -3'
miRNA:   3'- -GGCCUaCGCCugCaGUGUa-----GUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 161104 0.66 0.98791
Target:  5'- gUCGGcgGCGGugGUUuagucgggaauuGCAggaUCaACGCGGc -3'
miRNA:   3'- -GGCCuaCGCCugCAG------------UGU---AG-UGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 205678 0.66 0.98791
Target:  5'- cCCGGgcGCGuGGCG-CACccgcgcucaGUCGCgGCGAa -3'
miRNA:   3'- -GGCCuaCGC-CUGCaGUG---------UAGUG-CGCU- -5'
14065 5' -54.8 NC_003521.1 + 67571 0.66 0.987767
Target:  5'- -aGGcgGCGGGCcccgcgggccagaGUCGCcaaCACGCGGg -3'
miRNA:   3'- ggCCuaCGCCUG-------------CAGUGua-GUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 122530 0.66 0.987476
Target:  5'- gCCGGcgGCGGugGUagugcugcugcuacCGCcgCugGUGc -3'
miRNA:   3'- -GGCCuaCGCCugCA--------------GUGuaGugCGCu -5'
14065 5' -54.8 NC_003521.1 + 166251 0.66 0.986416
Target:  5'- cCCGGcgaGCGGGCcgugcUCACGggCACGCGc -3'
miRNA:   3'- -GGCCua-CGCCUGc----AGUGUa-GUGCGCu -5'
14065 5' -54.8 NC_003521.1 + 183127 0.66 0.986416
Target:  5'- cCCGGuUGCGG-CgGUCGCAUCccCGUGc -3'
miRNA:   3'- -GGCCuACGCCuG-CAGUGUAGu-GCGCu -5'
14065 5' -54.8 NC_003521.1 + 164452 0.66 0.984784
Target:  5'- gCGGccGCGGcCGUCACgGUCGcCGCu- -3'
miRNA:   3'- gGCCuaCGCCuGCAGUG-UAGU-GCGcu -5'
14065 5' -54.8 NC_003521.1 + 226079 0.66 0.984784
Target:  5'- cCCGGccGCGGcCGgCcCGUCACGCc- -3'
miRNA:   3'- -GGCCuaCGCCuGCaGuGUAGUGCGcu -5'
14065 5' -54.8 NC_003521.1 + 131387 0.66 0.984784
Target:  5'- gCCGaGGUGaCGGGCGUCagccuggaccGCAUCGC-CGu -3'
miRNA:   3'- -GGC-CUAC-GCCUGCAG----------UGUAGUGcGCu -5'
14065 5' -54.8 NC_003521.1 + 155632 0.66 0.984784
Target:  5'- cUCGGcgGCGGugGUaGCAgaaGCGCc- -3'
miRNA:   3'- -GGCCuaCGCCugCAgUGUag-UGCGcu -5'
14065 5' -54.8 NC_003521.1 + 157700 0.66 0.984784
Target:  5'- -aGGAgaUGUGGAUG-CACGUU-CGCGAg -3'
miRNA:   3'- ggCCU--ACGCCUGCaGUGUAGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 36976 0.66 0.983007
Target:  5'- gCGGGUGCucGGCGgcgACAUC-CGCGAc -3'
miRNA:   3'- gGCCUACGc-CUGCag-UGUAGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 169458 0.66 0.983007
Target:  5'- gCGGcgGCGGGuuCGUCGCcagGCGCGu -3'
miRNA:   3'- gGCCuaCGCCU--GCAGUGuagUGCGCu -5'
14065 5' -54.8 NC_003521.1 + 7452 0.66 0.983007
Target:  5'- uCCGGAUcCcGGCGaCGCAUC-CGCGGa -3'
miRNA:   3'- -GGCCUAcGcCUGCaGUGUAGuGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 112831 0.66 0.983007
Target:  5'- cCCGGAUuccgugGCGGGCGUCAUG--GC-CGAg -3'
miRNA:   3'- -GGCCUA------CGCCUGCAGUGUagUGcGCU- -5'
14065 5' -54.8 NC_003521.1 + 184845 0.66 0.983007
Target:  5'- aCCGGcUGCGGcCccugCACAUCgGCGUGGu -3'
miRNA:   3'- -GGCCuACGCCuGca--GUGUAG-UGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 171656 0.66 0.981078
Target:  5'- gCCGcg-GCGGGCGUCgggaGCGUCG-GCGGc -3'
miRNA:   3'- -GGCcuaCGCCUGCAG----UGUAGUgCGCU- -5'
14065 5' -54.8 NC_003521.1 + 17198 0.66 0.981078
Target:  5'- gUCGGGgcuaugGCGaGagaagaGCGUCGcCGUCGCGCGGu -3'
miRNA:   3'- -GGCCUa-----CGC-C------UGCAGU-GUAGUGCGCU- -5'
14065 5' -54.8 NC_003521.1 + 142130 0.66 0.981078
Target:  5'- gCUGGAgGCGGACGaCGCGgaaaACGCc- -3'
miRNA:   3'- -GGCCUaCGCCUGCaGUGUag--UGCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.