miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14066 5' -63.2 NC_003521.1 + 148428 0.66 0.717079
Target:  5'- cGGGCGGccGCgCCGGCGgcuccagggguGGCcg-GUGCGu -3'
miRNA:   3'- -UCCGCC--CGgGGCCGC-----------UCGauaCACGC- -5'
14066 5' -63.2 NC_003521.1 + 131056 0.66 0.717079
Target:  5'- cGGCGGGCCuCUGGac-GCgGUGgcgGCGa -3'
miRNA:   3'- uCCGCCCGG-GGCCgcuCGaUACa--CGC- -5'
14066 5' -63.2 NC_003521.1 + 19340 0.66 0.717079
Target:  5'- cGG-GGaGCUCCGGCGAGgaGcccucGUGCGa -3'
miRNA:   3'- uCCgCC-CGGGGCCGCUCgaUa----CACGC- -5'
14066 5' -63.2 NC_003521.1 + 212710 0.66 0.716155
Target:  5'- uGGGuCGGGCCUCgaucuugGGCGAGCgcc-UGCu -3'
miRNA:   3'- -UCC-GCCCGGGG-------CCGCUCGauacACGc -5'
14066 5' -63.2 NC_003521.1 + 224745 0.66 0.716155
Target:  5'- cAGGCggccagcgcgucgGGGCUCCGGC-AGU--UGUGCa -3'
miRNA:   3'- -UCCG-------------CCCGGGGCCGcUCGauACACGc -5'
14066 5' -63.2 NC_003521.1 + 29411 0.66 0.707814
Target:  5'- gAGGacagucCGGGCCCCGGUGAcaGCUAcaaccaGCGc -3'
miRNA:   3'- -UCC------GCCCGGGGCCGCU--CGAUaca---CGC- -5'
14066 5' -63.2 NC_003521.1 + 232204 0.66 0.698493
Target:  5'- --aUGGGCCCCcGCGGGUggugguggcUGUGCGg -3'
miRNA:   3'- uccGCCCGGGGcCGCUCGau-------ACACGC- -5'
14066 5' -63.2 NC_003521.1 + 89013 0.66 0.686306
Target:  5'- -cGCGGGCCCCaccggcgccacggcGGUGAGUUccucgccgcucAUgGUGCGg -3'
miRNA:   3'- ucCGCCCGGGG--------------CCGCUCGA-----------UA-CACGC- -5'
14066 5' -63.2 NC_003521.1 + 54531 0.66 0.686306
Target:  5'- cGGCgccgcuGGGgCCCGGCGGcuuuuugacguugcGCUugacgcggGUGUGCGg -3'
miRNA:   3'- uCCG------CCCgGGGCCGCU--------------CGA--------UACACGC- -5'
14066 5' -63.2 NC_003521.1 + 92101 0.66 0.685366
Target:  5'- aGGGCGGuGCCCCGGguCGGaacccccggGUGCGg -3'
miRNA:   3'- -UCCGCC-CGGGGCC--GCUcgaua----CACGC- -5'
14066 5' -63.2 NC_003521.1 + 186919 0.66 0.679715
Target:  5'- aAGGgGGGCgCCGGUG-GCgggGgcgGCGg -3'
miRNA:   3'- -UCCgCCCGgGGCCGCuCGauaCa--CGC- -5'
14066 5' -63.2 NC_003521.1 + 113584 0.66 0.679715
Target:  5'- gGGGCuGGGCCUCGG-GGGCaacgGggGCGg -3'
miRNA:   3'- -UCCG-CCCGGGGCCgCUCGaua-Ca-CGC- -5'
14066 5' -63.2 NC_003521.1 + 148352 0.66 0.674053
Target:  5'- gAGGCuGGGagacCCCCGaGCGGGCaagccgagcgggGUGCGg -3'
miRNA:   3'- -UCCG-CCC----GGGGC-CGCUCGaua---------CACGC- -5'
14066 5' -63.2 NC_003521.1 + 126777 0.66 0.669326
Target:  5'- cGGCaGGCCCUGGCGcugcgcgugguccAGCUccGcGCGc -3'
miRNA:   3'- uCCGcCCGGGGCCGC-------------UCGAuaCaCGC- -5'
14066 5' -63.2 NC_003521.1 + 99329 0.67 0.660802
Target:  5'- gAGGCGGGCCa-GGUGGGCaccucGCGc -3'
miRNA:   3'- -UCCGCCCGGggCCGCUCGauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 77730 0.67 0.660802
Target:  5'- cGGC-GGCCUCGGUGGGCg----GCGu -3'
miRNA:   3'- uCCGcCCGGGGCCGCUCGauacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 224019 0.67 0.651312
Target:  5'- cGGCGGGCCCggcggucggGGCGGGCgccGUcGCc -3'
miRNA:   3'- uCCGCCCGGGg--------CCGCUCGauaCA-CGc -5'
14066 5' -63.2 NC_003521.1 + 19126 0.67 0.641809
Target:  5'- uGGCGGGCCgCCGGUGuaccAGUcgGaGUGCc -3'
miRNA:   3'- uCCGCCCGG-GGCCGC----UCGa-UaCACGc -5'
14066 5' -63.2 NC_003521.1 + 155498 0.67 0.641809
Target:  5'- cGGCGGGCCgCgGGCcaaGGCUGga-GCGa -3'
miRNA:   3'- uCCGCCCGG-GgCCGc--UCGAUacaCGC- -5'
14066 5' -63.2 NC_003521.1 + 53388 0.67 0.641809
Target:  5'- aGGaGCaGGCCgCGGCGAGCaggggAUG-GCGc -3'
miRNA:   3'- -UC-CGcCCGGgGCCGCUCGa----UACaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.