Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14067 | 3' | -55.9 | NC_003521.1 | + | 211228 | 0.66 | 0.968642 |
Target: 5'- aAUGGUUAUaagCUCCGCCauGUCUCUgUCACa -3' miRNA: 3'- -UGCUAGUAa--GGGGCGG--CAGAGA-GGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 163599 | 0.66 | 0.968642 |
Target: 5'- --uGUCGUcCCCCGuaGgcugCUCUCCGCu -3' miRNA: 3'- ugcUAGUAaGGGGCggCa---GAGAGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 22113 | 0.66 | 0.965614 |
Target: 5'- uCGccCGccgCCgCCGCCGUCUCcUCCGCc -3' miRNA: 3'- uGCuaGUaa-GG-GGCGGCAGAG-AGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 21437 | 0.66 | 0.965614 |
Target: 5'- --cGUCGUgCCCguCGCCuGUCUCUUCGCg -3' miRNA: 3'- ugcUAGUAaGGG--GCGG-CAGAGAGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 72319 | 0.66 | 0.965614 |
Target: 5'- gGCGucgCcgUCCuCCGCCuccGUCUCgCCGCc -3' miRNA: 3'- -UGCua-GuaAGG-GGCGG---CAGAGaGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 235137 | 0.66 | 0.9653 |
Target: 5'- gGCGccCGUUCCCCGCggacgggcgcccgUGUCUCgaccccCCACc -3' miRNA: 3'- -UGCuaGUAAGGGGCG-------------GCAGAGa-----GGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 163406 | 0.66 | 0.962385 |
Target: 5'- uCGGcCGUggCCCCGUCGUCggCUgCCGCu -3' miRNA: 3'- uGCUaGUAa-GGGGCGGCAGa-GA-GGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 91114 | 0.66 | 0.962385 |
Target: 5'- cCGGUCGgggaUUCCCCGgcaucCCGUaauaCUCCGCg -3' miRNA: 3'- uGCUAGU----AAGGGGC-----GGCAga--GAGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 16871 | 0.66 | 0.962385 |
Target: 5'- uACGAcgugCGUUCCCCgcgGCCGcCUCgacccccucggCCGCg -3' miRNA: 3'- -UGCUa---GUAAGGGG---CGGCaGAGa----------GGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 92172 | 0.66 | 0.958952 |
Target: 5'- gGCGGcCA-UCCCCGCCGagCUCggggCCGu -3' miRNA: 3'- -UGCUaGUaAGGGGCGGCa-GAGa---GGUg -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 141614 | 0.66 | 0.958952 |
Target: 5'- -gGAccgCGgaCCCCGCCGUaucCUCCGCc -3' miRNA: 3'- ugCUa--GUaaGGGGCGGCAga-GAGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 124461 | 0.66 | 0.955309 |
Target: 5'- gGCGGcacgCGUUCgCCGCCGcgCUCgcgguccgUCCGCg -3' miRNA: 3'- -UGCUa---GUAAGgGGCGGCa-GAG--------AGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 175453 | 0.66 | 0.955309 |
Target: 5'- uACGAUCGgcggCgCGCCGUCUCcCCGg -3' miRNA: 3'- -UGCUAGUaag-GgGCGGCAGAGaGGUg -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 26681 | 0.66 | 0.955309 |
Target: 5'- cGCGGc---UCCCUGCUGcUCUaCUCCACg -3' miRNA: 3'- -UGCUaguaAGGGGCGGC-AGA-GAGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 71818 | 0.66 | 0.955309 |
Target: 5'- -aGAUCGUgccggCCCCGUCGcccgcCUC-CCGCg -3' miRNA: 3'- ugCUAGUAa----GGGGCGGCa----GAGaGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 32479 | 0.66 | 0.954175 |
Target: 5'- uACGAguUCAUUCCCCauaagGCCacgguaacggaacaGUCUCUCaGCg -3' miRNA: 3'- -UGCU--AGUAAGGGG-----CGG--------------CAGAGAGgUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 66780 | 0.66 | 0.954175 |
Target: 5'- gGCGAUCGcagcccacgugcgggCCaCCGCCGUCuccUCUCC-Ca -3' miRNA: 3'- -UGCUAGUaa-------------GG-GGCGGCAG---AGAGGuG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 204006 | 0.66 | 0.951453 |
Target: 5'- gACGAgcUCAUgCCcgaguCCGCCGUCcgcgagcggCUCCGCa -3' miRNA: 3'- -UGCU--AGUAaGG-----GGCGGCAGa--------GAGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 94538 | 0.66 | 0.951453 |
Target: 5'- gACGGaCGUUCCCUuuGCCGUCg--UCGCg -3' miRNA: 3'- -UGCUaGUAAGGGG--CGGCAGagaGGUG- -5' |
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14067 | 3' | -55.9 | NC_003521.1 | + | 138105 | 0.66 | 0.951453 |
Target: 5'- cACG-UC-UUCUgCGCCGUCUuCUCCGa -3' miRNA: 3'- -UGCuAGuAAGGgGCGGCAGA-GAGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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