miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14067 5' -57 NC_003521.1 + 89688 0.65 0.949499
Target:  5'- aGGAGGAGGAagaacgGAGGACagcagaggagagcgGGugGAagaCGUGg -3'
miRNA:   3'- gUCUCCUCCU------CUCCUG--------------CCugCU---GCAU- -5'
14067 5' -57 NC_003521.1 + 70379 0.66 0.94662
Target:  5'- gCAGGcGGcGGuAGAGGuaGCGGGCGuCGUAg -3'
miRNA:   3'- -GUCU-CCuCC-UCUCC--UGCCUGCuGCAU- -5'
14067 5' -57 NC_003521.1 + 169195 0.66 0.94662
Target:  5'- gGGAGGuGGAcgggcGGGGACGGAggaGACa-- -3'
miRNA:   3'- gUCUCCuCCU-----CUCCUGCCUg--CUGcau -5'
14067 5' -57 NC_003521.1 + 64431 0.66 0.94662
Target:  5'- -cGAGGAGGA--GGACGaGACGcGCGa- -3'
miRNA:   3'- guCUCCUCCUcuCCUGC-CUGC-UGCau -5'
14067 5' -57 NC_003521.1 + 155247 0.66 0.94662
Target:  5'- uGGuGGuGGuGGGGGGCGGcgGCGGCGg- -3'
miRNA:   3'- gUCuCCuCC-UCUCCUGCC--UGCUGCau -5'
14067 5' -57 NC_003521.1 + 238773 0.66 0.942322
Target:  5'- aCAGAGGuGGGGAcacGGcacagguagcaGCGGACGAguUGUGg -3'
miRNA:   3'- -GUCUCCuCCUCU---CC-----------UGCCUGCU--GCAU- -5'
14067 5' -57 NC_003521.1 + 38546 0.66 0.942322
Target:  5'- aCAGAGGuGGGGAcacGGcacagguagcaGCGGACGAguUGUGg -3'
miRNA:   3'- -GUCUCCuCCUCU---CC-----------UGCCUGCU--GCAU- -5'
14067 5' -57 NC_003521.1 + 216737 0.66 0.937806
Target:  5'- uGGcGGA-GAGGGGAUGaGGCGACGg- -3'
miRNA:   3'- gUCuCCUcCUCUCCUGC-CUGCUGCau -5'
14067 5' -57 NC_003521.1 + 43873 0.66 0.937342
Target:  5'- aCAGAGGugauGGGGAGacgaGGCGGugaagaaggggagGCGACGUc -3'
miRNA:   3'- -GUCUCCu---CCUCUC----CUGCC-------------UGCUGCAu -5'
14067 5' -57 NC_003521.1 + 7846 0.66 0.93307
Target:  5'- aAGAcGAGGGGGuGGCGGACGGCc-- -3'
miRNA:   3'- gUCUcCUCCUCUcCUGCCUGCUGcau -5'
14067 5' -57 NC_003521.1 + 46032 0.66 0.93307
Target:  5'- -uGGGGAGGAGugaGGGGCGccAUGACGUu -3'
miRNA:   3'- guCUCCUCCUC---UCCUGCc-UGCUGCAu -5'
14067 5' -57 NC_003521.1 + 43597 0.66 0.93307
Target:  5'- aCGGAGGGGGcGAGGAaaGA-GACGg- -3'
miRNA:   3'- -GUCUCCUCCuCUCCUgcCUgCUGCau -5'
14067 5' -57 NC_003521.1 + 87770 0.66 0.930122
Target:  5'- gCGGAGGAGGccuGGGGGCcgccucgucggucucGGGCGGCc-- -3'
miRNA:   3'- -GUCUCCUCCu--CUCCUG---------------CCUGCUGcau -5'
14067 5' -57 NC_003521.1 + 148634 0.66 0.928112
Target:  5'- gCGGGGGAGGGGAGGccaGGGCa----- -3'
miRNA:   3'- -GUCUCCUCCUCUCCug-CCUGcugcau -5'
14067 5' -57 NC_003521.1 + 105146 0.66 0.928112
Target:  5'- -cGAGGucccccAGGAcGAGGugGuGACGACGc- -3'
miRNA:   3'- guCUCC------UCCU-CUCCugC-CUGCUGCau -5'
14067 5' -57 NC_003521.1 + 127041 0.66 0.928112
Target:  5'- aUAG-GGAGGAaccGAGGAUGGA-GACGc- -3'
miRNA:   3'- -GUCuCCUCCU---CUCCUGCCUgCUGCau -5'
14067 5' -57 NC_003521.1 + 227570 0.67 0.917533
Target:  5'- cCAGAacGGcAGGuaGGAGGACGGAUGAgGc- -3'
miRNA:   3'- -GUCU--CC-UCC--UCUCCUGCCUGCUgCau -5'
14067 5' -57 NC_003521.1 + 35962 0.67 0.917533
Target:  5'- aAGcGGAGGAuGGGcGACgaGGACGACGa- -3'
miRNA:   3'- gUCuCCUCCU-CUC-CUG--CCUGCUGCau -5'
14067 5' -57 NC_003521.1 + 215803 0.67 0.917533
Target:  5'- -cGAGGAGccGGAGGAaaaGGACGGCa-- -3'
miRNA:   3'- guCUCCUCc-UCUCCUg--CCUGCUGcau -5'
14067 5' -57 NC_003521.1 + 119029 0.67 0.911911
Target:  5'- ---cGGAuucGGAuAGGGCGGGCGGCGUc -3'
miRNA:   3'- gucuCCU---CCUcUCCUGCCUGCUGCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.