Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14067 | 5' | -57 | NC_003521.1 | + | 89688 | 0.65 | 0.949499 |
Target: 5'- aGGAGGAGGAagaacgGAGGACagcagaggagagcgGGugGAagaCGUGg -3' miRNA: 3'- gUCUCCUCCU------CUCCUG--------------CCugCU---GCAU- -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 70379 | 0.66 | 0.94662 |
Target: 5'- gCAGGcGGcGGuAGAGGuaGCGGGCGuCGUAg -3' miRNA: 3'- -GUCU-CCuCC-UCUCC--UGCCUGCuGCAU- -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 169195 | 0.66 | 0.94662 |
Target: 5'- gGGAGGuGGAcgggcGGGGACGGAggaGACa-- -3' miRNA: 3'- gUCUCCuCCU-----CUCCUGCCUg--CUGcau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 64431 | 0.66 | 0.94662 |
Target: 5'- -cGAGGAGGA--GGACGaGACGcGCGa- -3' miRNA: 3'- guCUCCUCCUcuCCUGC-CUGC-UGCau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 155247 | 0.66 | 0.94662 |
Target: 5'- uGGuGGuGGuGGGGGGCGGcgGCGGCGg- -3' miRNA: 3'- gUCuCCuCC-UCUCCUGCC--UGCUGCau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 238773 | 0.66 | 0.942322 |
Target: 5'- aCAGAGGuGGGGAcacGGcacagguagcaGCGGACGAguUGUGg -3' miRNA: 3'- -GUCUCCuCCUCU---CC-----------UGCCUGCU--GCAU- -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 38546 | 0.66 | 0.942322 |
Target: 5'- aCAGAGGuGGGGAcacGGcacagguagcaGCGGACGAguUGUGg -3' miRNA: 3'- -GUCUCCuCCUCU---CC-----------UGCCUGCU--GCAU- -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 216737 | 0.66 | 0.937806 |
Target: 5'- uGGcGGA-GAGGGGAUGaGGCGACGg- -3' miRNA: 3'- gUCuCCUcCUCUCCUGC-CUGCUGCau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 43873 | 0.66 | 0.937342 |
Target: 5'- aCAGAGGugauGGGGAGacgaGGCGGugaagaaggggagGCGACGUc -3' miRNA: 3'- -GUCUCCu---CCUCUC----CUGCC-------------UGCUGCAu -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 7846 | 0.66 | 0.93307 |
Target: 5'- aAGAcGAGGGGGuGGCGGACGGCc-- -3' miRNA: 3'- gUCUcCUCCUCUcCUGCCUGCUGcau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 43597 | 0.66 | 0.93307 |
Target: 5'- aCGGAGGGGGcGAGGAaaGA-GACGg- -3' miRNA: 3'- -GUCUCCUCCuCUCCUgcCUgCUGCau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 46032 | 0.66 | 0.93307 |
Target: 5'- -uGGGGAGGAGugaGGGGCGccAUGACGUu -3' miRNA: 3'- guCUCCUCCUC---UCCUGCc-UGCUGCAu -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 87770 | 0.66 | 0.930122 |
Target: 5'- gCGGAGGAGGccuGGGGGCcgccucgucggucucGGGCGGCc-- -3' miRNA: 3'- -GUCUCCUCCu--CUCCUG---------------CCUGCUGcau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 127041 | 0.66 | 0.928112 |
Target: 5'- aUAG-GGAGGAaccGAGGAUGGA-GACGc- -3' miRNA: 3'- -GUCuCCUCCU---CUCCUGCCUgCUGCau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 105146 | 0.66 | 0.928112 |
Target: 5'- -cGAGGucccccAGGAcGAGGugGuGACGACGc- -3' miRNA: 3'- guCUCC------UCCU-CUCCugC-CUGCUGCau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 148634 | 0.66 | 0.928112 |
Target: 5'- gCGGGGGAGGGGAGGccaGGGCa----- -3' miRNA: 3'- -GUCUCCUCCUCUCCug-CCUGcugcau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 227570 | 0.67 | 0.917533 |
Target: 5'- cCAGAacGGcAGGuaGGAGGACGGAUGAgGc- -3' miRNA: 3'- -GUCU--CC-UCC--UCUCCUGCCUGCUgCau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 35962 | 0.67 | 0.917533 |
Target: 5'- aAGcGGAGGAuGGGcGACgaGGACGACGa- -3' miRNA: 3'- gUCuCCUCCU-CUC-CUG--CCUGCUGCau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 215803 | 0.67 | 0.917533 |
Target: 5'- -cGAGGAGccGGAGGAaaaGGACGGCa-- -3' miRNA: 3'- guCUCCUCc-UCUCCUg--CCUGCUGcau -5' |
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14067 | 5' | -57 | NC_003521.1 | + | 119029 | 0.67 | 0.911911 |
Target: 5'- ---cGGAuucGGAuAGGGCGGGCGGCGUc -3' miRNA: 3'- gucuCCU---CCUcUCCUGCCUGCUGCAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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