Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14070 | 5' | -62 | NC_003521.1 | + | 196327 | 0.65 | 0.767397 |
Target: 5'- gACGACGGCgGCUgCagcucgauuuccagCGCGuGCAGGUAg -3' miRNA: 3'- aUGCUGCUGgUGGgG--------------GCGC-CGUCCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 79678 | 0.66 | 0.76116 |
Target: 5'- aACGACGuCCgcgACCgCCCGCGGCcGcGUu -3' miRNA: 3'- aUGCUGCuGG---UGG-GGGCGCCGuC-CAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 73220 | 0.66 | 0.76116 |
Target: 5'- gACGACGACCaacGCCaCCacgaGCGGCAa--- -3' miRNA: 3'- aUGCUGCUGG---UGG-GGg---CGCCGUccau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 179297 | 0.66 | 0.76116 |
Target: 5'- aGCGAgCGucCCAUCUCCGUGGUagaaGGGUGg -3' miRNA: 3'- aUGCU-GCu-GGUGGGGGCGCCG----UCCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 217285 | 0.66 | 0.76116 |
Target: 5'- gGCGcUGGCCACCaccaCCGacaGGguGGUGa -3' miRNA: 3'- aUGCuGCUGGUGGg---GGCg--CCguCCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 168547 | 0.66 | 0.76116 |
Target: 5'- cGCGGCGGCgGCgCUgGCGggcuGCGGGUAa -3' miRNA: 3'- aUGCUGCUGgUGgGGgCGC----CGUCCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 16870 | 0.66 | 0.76116 |
Target: 5'- cUACGACGuGCguUCCCCGCGGCc---- -3' miRNA: 3'- -AUGCUGC-UGguGGGGGCGCCGuccau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 101182 | 0.66 | 0.76116 |
Target: 5'- gACGGCGuCCGCgCCCgGCgGGCGGa-- -3' miRNA: 3'- aUGCUGCuGGUG-GGGgCG-CCGUCcau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 152786 | 0.66 | 0.76116 |
Target: 5'- cUGCGccuuGCGcACCGCCUCgGUcaccGGCAGGUGg -3' miRNA: 3'- -AUGC----UGC-UGGUGGGGgCG----CCGUCCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 178355 | 0.66 | 0.760265 |
Target: 5'- gACGACGACgGCgguuuccaaaaauCCCCgugcgcgcGCGGCGGGc- -3' miRNA: 3'- aUGCUGCUGgUG-------------GGGG--------CGCCGUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 38907 | 0.66 | 0.752166 |
Target: 5'- cUGCGGCGuccCCGCCCUguguCGUGGCGGcaGUAg -3' miRNA: 3'- -AUGCUGCu--GGUGGGG----GCGCCGUC--CAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 168669 | 0.66 | 0.752166 |
Target: 5'- gACGGCG-CCGgagguCCCUgGUGGCAGGc- -3' miRNA: 3'- aUGCUGCuGGU-----GGGGgCGCCGUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 91946 | 0.66 | 0.752166 |
Target: 5'- -cCGGCGGCgGaCCCCGUGGCGGcGa- -3' miRNA: 3'- auGCUGCUGgUgGGGGCGCCGUC-Cau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 151202 | 0.66 | 0.752166 |
Target: 5'- cGCGACGgucACCACCacggugaCCGCGGCGc--- -3' miRNA: 3'- aUGCUGC---UGGUGGg------GGCGCCGUccau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 184805 | 0.66 | 0.743078 |
Target: 5'- -cUGGUGGCCGCCUCCGacuGGUGGGUGg -3' miRNA: 3'- auGCUGCUGGUGGGGGCg--CCGUCCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 132684 | 0.66 | 0.743078 |
Target: 5'- gACGAuCGGCuCGCgCCCgGCuGGCGGGa- -3' miRNA: 3'- aUGCU-GCUG-GUG-GGGgCG-CCGUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 218181 | 0.66 | 0.743078 |
Target: 5'- -gUGACGACgACCCagGCGuaGCAGGUGc -3' miRNA: 3'- auGCUGCUGgUGGGggCGC--CGUCCAU- -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 222149 | 0.66 | 0.743078 |
Target: 5'- gAUGAUGGuCCugcagcGCCCCCGUGGCcagcAGGUc -3' miRNA: 3'- aUGCUGCU-GG------UGGGGGCGCCG----UCCAu -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 150406 | 0.66 | 0.743078 |
Target: 5'- gGCGGCGACgaGCCCggacccgucugUCGCGuGCAGGa- -3' miRNA: 3'- aUGCUGCUGg-UGGG-----------GGCGC-CGUCCau -5' |
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14070 | 5' | -62 | NC_003521.1 | + | 201815 | 0.66 | 0.737584 |
Target: 5'- gGCGGCGcCCGCUCCgGCcucgacaccuaccuuGGguGGUAa -3' miRNA: 3'- aUGCUGCuGGUGGGGgCG---------------CCguCCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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