miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 196327 0.65 0.767397
Target:  5'- gACGACGGCgGCUgCagcucgauuuccagCGCGuGCAGGUAg -3'
miRNA:   3'- aUGCUGCUGgUGGgG--------------GCGC-CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 152786 0.66 0.76116
Target:  5'- cUGCGccuuGCGcACCGCCUCgGUcaccGGCAGGUGg -3'
miRNA:   3'- -AUGC----UGC-UGGUGGGGgCG----CCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 73220 0.66 0.76116
Target:  5'- gACGACGACCaacGCCaCCacgaGCGGCAa--- -3'
miRNA:   3'- aUGCUGCUGG---UGG-GGg---CGCCGUccau -5'
14070 5' -62 NC_003521.1 + 179297 0.66 0.76116
Target:  5'- aGCGAgCGucCCAUCUCCGUGGUagaaGGGUGg -3'
miRNA:   3'- aUGCU-GCu-GGUGGGGGCGCCG----UCCAU- -5'
14070 5' -62 NC_003521.1 + 217285 0.66 0.76116
Target:  5'- gGCGcUGGCCACCaccaCCGacaGGguGGUGa -3'
miRNA:   3'- aUGCuGCUGGUGGg---GGCg--CCguCCAU- -5'
14070 5' -62 NC_003521.1 + 168547 0.66 0.76116
Target:  5'- cGCGGCGGCgGCgCUgGCGggcuGCGGGUAa -3'
miRNA:   3'- aUGCUGCUGgUGgGGgCGC----CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 16870 0.66 0.76116
Target:  5'- cUACGACGuGCguUCCCCGCGGCc---- -3'
miRNA:   3'- -AUGCUGC-UGguGGGGGCGCCGuccau -5'
14070 5' -62 NC_003521.1 + 101182 0.66 0.76116
Target:  5'- gACGGCGuCCGCgCCCgGCgGGCGGa-- -3'
miRNA:   3'- aUGCUGCuGGUG-GGGgCG-CCGUCcau -5'
14070 5' -62 NC_003521.1 + 79678 0.66 0.76116
Target:  5'- aACGACGuCCgcgACCgCCCGCGGCcGcGUu -3'
miRNA:   3'- aUGCUGCuGG---UGG-GGGCGCCGuC-CAu -5'
14070 5' -62 NC_003521.1 + 178355 0.66 0.760265
Target:  5'- gACGACGACgGCgguuuccaaaaauCCCCgugcgcgcGCGGCGGGc- -3'
miRNA:   3'- aUGCUGCUGgUG-------------GGGG--------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 38907 0.66 0.752166
Target:  5'- cUGCGGCGuccCCGCCCUguguCGUGGCGGcaGUAg -3'
miRNA:   3'- -AUGCUGCu--GGUGGGG----GCGCCGUC--CAU- -5'
14070 5' -62 NC_003521.1 + 151202 0.66 0.752166
Target:  5'- cGCGACGgucACCACCacggugaCCGCGGCGc--- -3'
miRNA:   3'- aUGCUGC---UGGUGGg------GGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 91946 0.66 0.752166
Target:  5'- -cCGGCGGCgGaCCCCGUGGCGGcGa- -3'
miRNA:   3'- auGCUGCUGgUgGGGGCGCCGUC-Cau -5'
14070 5' -62 NC_003521.1 + 168669 0.66 0.752166
Target:  5'- gACGGCG-CCGgagguCCCUgGUGGCAGGc- -3'
miRNA:   3'- aUGCUGCuGGU-----GGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 132684 0.66 0.743078
Target:  5'- gACGAuCGGCuCGCgCCCgGCuGGCGGGa- -3'
miRNA:   3'- aUGCU-GCUG-GUG-GGGgCG-CCGUCCau -5'
14070 5' -62 NC_003521.1 + 150406 0.66 0.743078
Target:  5'- gGCGGCGACgaGCCCggacccgucugUCGCGuGCAGGa- -3'
miRNA:   3'- aUGCUGCUGg-UGGG-----------GGCGC-CGUCCau -5'
14070 5' -62 NC_003521.1 + 222149 0.66 0.743078
Target:  5'- gAUGAUGGuCCugcagcGCCCCCGUGGCcagcAGGUc -3'
miRNA:   3'- aUGCUGCU-GG------UGGGGGCGCCG----UCCAu -5'
14070 5' -62 NC_003521.1 + 218181 0.66 0.743078
Target:  5'- -gUGACGACgACCCagGCGuaGCAGGUGc -3'
miRNA:   3'- auGCUGCUGgUGGGggCGC--CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 184805 0.66 0.743078
Target:  5'- -cUGGUGGCCGCCUCCGacuGGUGGGUGg -3'
miRNA:   3'- auGCUGCUGGUGGGGGCg--CCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 201815 0.66 0.737584
Target:  5'- gGCGGCGcCCGCUCCgGCcucgacaccuaccuuGGguGGUAa -3'
miRNA:   3'- aUGCUGCuGGUGGGGgCG---------------CCguCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.