miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14070 5' -62 NC_003521.1 + 196708 0.69 0.572029
Target:  5'- aGCGACGGCCgACUucaCCgGCGGCGacGGUGg -3'
miRNA:   3'- aUGCUGCUGG-UGG---GGgCGCCGU--CCAU- -5'
14070 5' -62 NC_003521.1 + 196368 0.66 0.719068
Target:  5'- -uCGGCGAacacuuccaCCGCCuCCUgcguggugaagggcgGCGGCAGGUAg -3'
miRNA:   3'- auGCUGCU---------GGUGG-GGG---------------CGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 196327 0.65 0.767397
Target:  5'- gACGACGGCgGCUgCagcucgauuuccagCGCGuGCAGGUAg -3'
miRNA:   3'- aUGCUGCUGgUGGgG--------------GCGC-CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 191250 0.78 0.165878
Target:  5'- gGCGGCG-CCGCggCCCaCGCGGCAGGUGg -3'
miRNA:   3'- aUGCUGCuGGUG--GGG-GCGCCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 190289 0.68 0.648739
Target:  5'- cUGCGAUacuGCCGCgaaCCCCGCGGCccauuGGUAc -3'
miRNA:   3'- -AUGCUGc--UGGUG---GGGGCGCCGu----CCAU- -5'
14070 5' -62 NC_003521.1 + 184805 0.66 0.743078
Target:  5'- -cUGGUGGCCGCCUCCGacuGGUGGGUGg -3'
miRNA:   3'- auGCUGCUGGUGGGGGCg--CCGUCCAU- -5'
14070 5' -62 NC_003521.1 + 181262 0.69 0.572029
Target:  5'- --gGACGAa-ACCCCCGCGGCGccGGa- -3'
miRNA:   3'- augCUGCUggUGGGGGCGCCGU--CCau -5'
14070 5' -62 NC_003521.1 + 179297 0.66 0.76116
Target:  5'- aGCGAgCGucCCAUCUCCGUGGUagaaGGGUGg -3'
miRNA:   3'- aUGCU-GCu-GGUGGGGGCGCCG----UCCAU- -5'
14070 5' -62 NC_003521.1 + 178355 0.66 0.760265
Target:  5'- gACGACGACgGCgguuuccaaaaauCCCCgugcgcgcGCGGCGGGc- -3'
miRNA:   3'- aUGCUGCUGgUG-------------GGGG--------CGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 169555 0.67 0.657384
Target:  5'- cGCGGCccCCGCCUCCGCcgauguuGGCGGGa- -3'
miRNA:   3'- aUGCUGcuGGUGGGGGCG-------CCGUCCau -5'
14070 5' -62 NC_003521.1 + 168669 0.66 0.752166
Target:  5'- gACGGCG-CCGgagguCCCUgGUGGCAGGc- -3'
miRNA:   3'- aUGCUGCuGGU-----GGGGgCGCCGUCCau -5'
14070 5' -62 NC_003521.1 + 168547 0.66 0.76116
Target:  5'- cGCGGCGGCgGCgCUgGCGggcuGCGGGUAa -3'
miRNA:   3'- aUGCUGCUGgUGgGGgCGC----CGUCCAU- -5'
14070 5' -62 NC_003521.1 + 167841 0.68 0.629501
Target:  5'- ---aGCGGCCAggcCCCCCGCGGCcgcuucuucaugAGGUc -3'
miRNA:   3'- augcUGCUGGU---GGGGGCGCCG------------UCCAu -5'
14070 5' -62 NC_003521.1 + 167646 0.66 0.733904
Target:  5'- gAUGcCGGCCAgCUCCGCGcCAGGUc -3'
miRNA:   3'- aUGCuGCUGGUgGGGGCGCcGUCCAu -5'
14070 5' -62 NC_003521.1 + 167444 0.68 0.639122
Target:  5'- -cCGugGACCACcaCCCCGUGGuCAGa-- -3'
miRNA:   3'- auGCugCUGGUG--GGGGCGCC-GUCcau -5'
14070 5' -62 NC_003521.1 + 165890 0.66 0.724653
Target:  5'- gGCGGCGgguacACCACCCCgCGCuGCcGGg- -3'
miRNA:   3'- aUGCUGC-----UGGUGGGG-GCGcCGuCCau -5'
14070 5' -62 NC_003521.1 + 164850 0.67 0.705946
Target:  5'- gGCGAgGGCCGCuCCUCGuCGG-GGGUGu -3'
miRNA:   3'- aUGCUgCUGGUG-GGGGC-GCCgUCCAU- -5'
14070 5' -62 NC_003521.1 + 158632 0.67 0.696506
Target:  5'- cACGgaguACGuGCCACCCCCcauGUGGgAGGUGc -3'
miRNA:   3'- aUGC----UGC-UGGUGGGGG---CGCCgUCCAU- -5'
14070 5' -62 NC_003521.1 + 157982 0.74 0.300943
Target:  5'- aGCGACG-CCGCCgCCCGCGGCGa--- -3'
miRNA:   3'- aUGCUGCuGGUGG-GGGCGCCGUccau -5'
14070 5' -62 NC_003521.1 + 157057 0.67 0.705004
Target:  5'- cGCGGCGgggggcgccGCCAcccugucccaggcCCCCCGCGGUgAGGa- -3'
miRNA:   3'- aUGCUGC---------UGGU-------------GGGGGCGCCG-UCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.