miRNA display CGI


Results 1 - 20 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14073 5' -54.9 NC_003521.1 + 31271 0.66 0.982342
Target:  5'- cCACCGUCgcCGCC-ACc-CCGCCGGg -3'
miRNA:   3'- aGUGGUAGaaGCGGcUGcuGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 147912 0.66 0.982342
Target:  5'- gCGCCGUCgcUGCCGuauCGAgCGCaCGGg -3'
miRNA:   3'- aGUGGUAGaaGCGGCu--GCUgGUG-GUC- -5'
14073 5' -54.9 NC_003521.1 + 12539 0.66 0.982342
Target:  5'- --uCCA-CUUCGCCGugGAggaCGCCGa -3'
miRNA:   3'- aguGGUaGAAGCGGCugCUg--GUGGUc -5'
14073 5' -54.9 NC_003521.1 + 164572 0.66 0.982342
Target:  5'- cUCGCCAcCggUGCUGGCGAgacaguaaCCGCCAc -3'
miRNA:   3'- -AGUGGUaGaaGCGGCUGCU--------GGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 100795 0.66 0.982342
Target:  5'- cCGCCAUggcCUUCugcgGCCGcuaccGCGACUACCAc -3'
miRNA:   3'- aGUGGUA---GAAG----CGGC-----UGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 187609 0.66 0.982342
Target:  5'- uUCGCCcgCggacUC-CCGGCGAgcUCACCGGa -3'
miRNA:   3'- -AGUGGuaGa---AGcGGCUGCU--GGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 115385 0.66 0.982342
Target:  5'- cCGgCAUgUgcagggCGCgGGCGGCCGCCAc -3'
miRNA:   3'- aGUgGUAgAa-----GCGgCUGCUGGUGGUc -5'
14073 5' -54.9 NC_003521.1 + 84603 0.66 0.982342
Target:  5'- -gACCAgcUCggCGUCGGUGACgGCCAGg -3'
miRNA:   3'- agUGGU--AGaaGCGGCUGCUGgUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 177486 0.66 0.982342
Target:  5'- aUCGCgCGg---CGCCGACGACauaaguCCAGa -3'
miRNA:   3'- -AGUG-GUagaaGCGGCUGCUGgu----GGUC- -5'
14073 5' -54.9 NC_003521.1 + 153496 0.66 0.982342
Target:  5'- -gGCCGUCUggucagCGCCagcGugGACCGCa-- -3'
miRNA:   3'- agUGGUAGAa-----GCGG---CugCUGGUGguc -5'
14073 5' -54.9 NC_003521.1 + 222748 0.66 0.982342
Target:  5'- gCGCCGUCUggGCU-ACGGCCACg-- -3'
miRNA:   3'- aGUGGUAGAagCGGcUGCUGGUGguc -5'
14073 5' -54.9 NC_003521.1 + 221787 0.66 0.982342
Target:  5'- uUCAUCGUCUUCcUCGGCGGgCAUgGGc -3'
miRNA:   3'- -AGUGGUAGAAGcGGCUGCUgGUGgUC- -5'
14073 5' -54.9 NC_003521.1 + 14919 0.66 0.982342
Target:  5'- gUCACCGgcgCUUCGagcgCGAgCGGCagCGCCAGa -3'
miRNA:   3'- -AGUGGUa--GAAGCg---GCU-GCUG--GUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 209744 0.66 0.982149
Target:  5'- cCGCCGUCgUCGCUGuuGGCCgguucucACCAu -3'
miRNA:   3'- aGUGGUAGaAGCGGCugCUGG-------UGGUc -5'
14073 5' -54.9 NC_003521.1 + 150764 0.66 0.981757
Target:  5'- cCGCCcgCgugugcgcUCGCgCGACGacgggcgggcgcgaGCCGCCAGg -3'
miRNA:   3'- aGUGGuaGa-------AGCG-GCUGC--------------UGGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 168958 0.66 0.981559
Target:  5'- gUCGCCGUCgcucccgcugcugUCGCCGACG-CgCGUCGGu -3'
miRNA:   3'- -AGUGGUAGa------------AGCGGCUGCuG-GUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 55596 0.66 0.981157
Target:  5'- aCACCGUCUccUCGUCGuacacgcagucccgcGCGGCCcacACCGa -3'
miRNA:   3'- aGUGGUAGA--AGCGGC---------------UGCUGG---UGGUc -5'
14073 5' -54.9 NC_003521.1 + 127555 0.66 0.980335
Target:  5'- aCGCCGUCggccaggUGCuCGGCGAucagcgUCACCAGc -3'
miRNA:   3'- aGUGGUAGaa-----GCG-GCUGCU------GGUGGUC- -5'
14073 5' -54.9 NC_003521.1 + 123327 0.66 0.980335
Target:  5'- -aGCCGUCcgaaCaCCGACGGCC-CCAGc -3'
miRNA:   3'- agUGGUAGaa--GcGGCUGCUGGuGGUC- -5'
14073 5' -54.9 NC_003521.1 + 129707 0.66 0.980335
Target:  5'- aCGCCcgCUUCuGCCGGCcGCgGCCc- -3'
miRNA:   3'- aGUGGuaGAAG-CGGCUGcUGgUGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.