miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 212052 0.69 0.908949
Target:  5'- gCGCAGAAAgugcaGCGCuaGGGCgguggCGCGGCc- -3'
miRNA:   3'- -GCGUCUUUa----CGUG--CCUGa----GCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 211713 0.72 0.780957
Target:  5'- gCGCAGc---GCGCGGAUggUGCGGCGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGa-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 211566 0.69 0.890405
Target:  5'- aGcCAGua--GCGCGcacGCUCGCGGCGGu -3'
miRNA:   3'- gC-GUCuuuaCGUGCc--UGAGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 209540 0.71 0.823872
Target:  5'- cCGCGGuuAUGCgcccgGCGGGgUgGCGGCGa -3'
miRNA:   3'- -GCGUCuuUACG-----UGCCUgAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 208929 0.67 0.952689
Target:  5'- cCGCAGuuccuGUGcCGCGGcCUgGCGGUGcGg -3'
miRNA:   3'- -GCGUCuu---UAC-GUGCCuGAgCGCCGC-C- -5'
14086 5' -55.4 NC_003521.1 + 207750 0.67 0.952689
Target:  5'- uGCAGAAGgccaucuuCAUGGACcCGCugGGCGGc -3'
miRNA:   3'- gCGUCUUUac------GUGCCUGaGCG--CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 203689 0.67 0.958616
Target:  5'- aGCAGAAGccgcgcggcauguUGCGCGccgugaucuuguccGACaCGCGGUGGc -3'
miRNA:   3'- gCGUCUUU-------------ACGUGC--------------CUGaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 198363 0.68 0.935459
Target:  5'- uCGagaAGAAGUaGCGcCGGACggcgUUGUGGCGGg -3'
miRNA:   3'- -GCg--UCUUUA-CGU-GCCUG----AGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 197522 0.69 0.889754
Target:  5'- cCGgGGAAcgGUugucgaggagucgGCGGACgagaGCGGCGGc -3'
miRNA:   3'- -GCgUCUUuaCG-------------UGCCUGag--CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 197456 0.68 0.935459
Target:  5'- gCGcCAGcgcAUGCucugGCGGAUguucacgCGCGGCGGg -3'
miRNA:   3'- -GC-GUCuu-UACG----UGCCUGa------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 195170 0.71 0.831998
Target:  5'- aGCGGguGUGCGcCGGACcCcgcggagccgGCGGCGGu -3'
miRNA:   3'- gCGUCuuUACGU-GCCUGaG----------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 193274 0.67 0.948708
Target:  5'- uGCGGAGcggGUGCcgggACGGGCgucggagucggCGCGGgGGu -3'
miRNA:   3'- gCGUCUU---UACG----UGCCUGa----------GCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 193130 0.66 0.969473
Target:  5'- aGuCGGAAGUGCAgaGGggagGCUCaUGGCGGg -3'
miRNA:   3'- gC-GUCUUUACGUg-CC----UGAGcGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 192342 0.7 0.876982
Target:  5'- cCGuCAGAugGGUGCuCGGuGCUCGCacgGGCGGc -3'
miRNA:   3'- -GC-GUCU--UUACGuGCC-UGAGCG---CCGCC- -5'
14086 5' -55.4 NC_003521.1 + 192039 0.71 0.807141
Target:  5'- cCGCcGgcGUGCGCGGcagacgcgGCgucCGCGGCGGu -3'
miRNA:   3'- -GCGuCuuUACGUGCC--------UGa--GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 191373 0.68 0.940095
Target:  5'- aGCAGAAGcGCGCaGACggCGUGGaGGa -3'
miRNA:   3'- gCGUCUUUaCGUGcCUGa-GCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 190533 0.68 0.930601
Target:  5'- aGC-GAGGUGCgGCGGcaGCa-GCGGCGGa -3'
miRNA:   3'- gCGuCUUUACG-UGCC--UGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 187876 0.66 0.972237
Target:  5'- gGCGGucaccaccucgGGcgGCACGGGCg-GCGGgGGc -3'
miRNA:   3'- gCGUC-----------UUuaCGUGCCUGagCGCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 187584 0.66 0.979227
Target:  5'- cCGCGGggGcuucgccgGCggucgcuucgcccGCGGACUCcCGGCGa -3'
miRNA:   3'- -GCGUCuuUa-------CG-------------UGCCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 187184 0.7 0.847736
Target:  5'- uGCGGAGAcggcccgccUGCAUcggGGACauUCGuCGGCGGa -3'
miRNA:   3'- gCGUCUUU---------ACGUG---CCUG--AGC-GCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.