miRNA display CGI


Results 21 - 40 of 226 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14086 5' -55.4 NC_003521.1 + 187184 0.7 0.847736
Target:  5'- uGCGGAGAcggcccgccUGCAUcggGGACauUCGuCGGCGGa -3'
miRNA:   3'- gCGUCUUU---------ACGUG---CCUG--AGC-GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 195170 0.71 0.831998
Target:  5'- aGCGGguGUGCGcCGGACcCcgcggagccgGCGGCGGu -3'
miRNA:   3'- gCGUCuuUACGU-GCCUGaG----------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 211713 0.72 0.780957
Target:  5'- gCGCAGc---GCGCGGAUggUGCGGCGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGa-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 85859 0.74 0.667261
Target:  5'- aCGCAGAuGAUGCAgGGcaccaggcGCUCGCGGUa- -3'
miRNA:   3'- -GCGUCU-UUACGUgCC--------UGAGCGCCGcc -5'
14086 5' -55.4 NC_003521.1 + 183784 0.7 0.886466
Target:  5'- gGCAGGAcgaGUGCcUGGGCggcguguucauccgCGUGGCGGc -3'
miRNA:   3'- gCGUCUU---UACGuGCCUGa-------------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 7955 0.7 0.869963
Target:  5'- -cCAGAucgcCGCGGugUCGCGGcCGGg -3'
miRNA:   3'- gcGUCUuuacGUGCCugAGCGCC-GCC- -5'
14086 5' -55.4 NC_003521.1 + 164202 0.71 0.815584
Target:  5'- gGCGGAAcgGCG-GGGCg-GCGGUGGu -3'
miRNA:   3'- gCGUCUUuaCGUgCCUGagCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 157028 0.74 0.667261
Target:  5'- aGCAGGuuucggggGCGCGGuCggaggagCGCGGCGGg -3'
miRNA:   3'- gCGUCUuua-----CGUGCCuGa------GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 19955 0.7 0.862746
Target:  5'- uGguGAGGUGgC-CGGGCUgGCGGUGa -3'
miRNA:   3'- gCguCUUUAC-GuGCCUGAgCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 39212 0.74 0.666278
Target:  5'- cCGCAGca--GCGCGGGCUCggggacaGCGGUGGc -3'
miRNA:   3'- -GCGUCuuuaCGUGCCUGAG-------CGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 111240 0.71 0.831998
Target:  5'- uCGCGGccg-GCGCGG---CGCGGCGGa -3'
miRNA:   3'- -GCGUCuuuaCGUGCCugaGCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 16708 0.7 0.847736
Target:  5'- gGCAGAc--GCGCGuGAUgCGCGGCGa -3'
miRNA:   3'- gCGUCUuuaCGUGC-CUGaGCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 113854 0.72 0.79855
Target:  5'- gGCGGccggcgacGAcgGCGCGGGUUcCGCGGCGGc -3'
miRNA:   3'- gCGUC--------UUuaCGUGCCUGA-GCGCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 186745 0.72 0.788939
Target:  5'- gGC-GAGcccAUGCugGGGCUCGgcggcauCGGCGGa -3'
miRNA:   3'- gCGuCUU---UACGugCCUGAGC-------GCCGCC- -5'
14086 5' -55.4 NC_003521.1 + 78525 0.72 0.753655
Target:  5'- aCGCGGAuuc-CGCGGACUCcCGGCGu -3'
miRNA:   3'- -GCGUCUuuacGUGCCUGAGcGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 18446 0.74 0.696585
Target:  5'- gCGCGGccuGUGCcgcuucgaccGCGGGCUgCGCGGCGa -3'
miRNA:   3'- -GCGUCuu-UACG----------UGCCUGA-GCGCCGCc -5'
14086 5' -55.4 NC_003521.1 + 78201 0.69 0.896802
Target:  5'- uGCGGAGcggGCGCGGcGCUCGuCGGaGGc -3'
miRNA:   3'- gCGUCUUua-CGUGCC-UGAGC-GCCgCC- -5'
14086 5' -55.4 NC_003521.1 + 56784 0.69 0.896802
Target:  5'- aGCuGcuGUGCGCgaGGGCUCGCGaCGGc -3'
miRNA:   3'- gCGuCuuUACGUG--CCUGAGCGCcGCC- -5'
14086 5' -55.4 NC_003521.1 + 38226 0.7 0.883125
Target:  5'- gCGCAGGGcgGCcucggcgggcgggGCGGAgaCGCGGCccaGGg -3'
miRNA:   3'- -GCGUCUUuaCG-------------UGCCUgaGCGCCG---CC- -5'
14086 5' -55.4 NC_003521.1 + 21948 0.7 0.869963
Target:  5'- gGCuGGA--GCAgUGGGCgagCGCGGCGGg -3'
miRNA:   3'- gCGuCUUuaCGU-GCCUGa--GCGCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.