miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14089 3' -50.7 NC_003521.1 + 201350 0.66 0.999047
Target:  5'- uCCACgAGGCGGCGACGGGacacgaaccgcugcCGUccccGGGAGc -3'
miRNA:   3'- -GGUG-UCUGCUGCUGUCU--------------GCA----CCUUUa -5'
14089 3' -50.7 NC_003521.1 + 200445 0.7 0.980014
Target:  5'- gCCAC-GACGcCGACAu-CGUGGAGAa -3'
miRNA:   3'- -GGUGuCUGCuGCUGUcuGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 199374 0.69 0.987385
Target:  5'- aCCACcgugguguAGACGGCGGCGGGgGUcGAGAa -3'
miRNA:   3'- -GGUG--------UCUGCUGCUGUCUgCAcCUUUa -5'
14089 3' -50.7 NC_003521.1 + 197569 0.66 0.999398
Target:  5'- aCGCAgGAUGGCGAUgAGGCGgaUGGAGc- -3'
miRNA:   3'- gGUGU-CUGCUGCUG-UCUGC--ACCUUua -5'
14089 3' -50.7 NC_003521.1 + 196721 0.77 0.7627
Target:  5'- uUCACcGGCGGCGACGGugGUGGc--- -3'
miRNA:   3'- -GGUGuCUGCUGCUGUCugCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 195427 0.71 0.973746
Target:  5'- gCCACGGcCGACGAagaggcggccgauGACGUGGAu-- -3'
miRNA:   3'- -GGUGUCuGCUGCUgu-----------CUGCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 193308 0.67 0.99812
Target:  5'- gCGCGGGgGugGugGGcACgGUGGggGUg -3'
miRNA:   3'- gGUGUCUgCugCugUC-UG-CACCuuUA- -5'
14089 3' -50.7 NC_003521.1 + 192825 0.68 0.994296
Target:  5'- gCCGCAGAagccCGGCGGCGcGucCGUGGAc-- -3'
miRNA:   3'- -GGUGUCU----GCUGCUGU-Cu-GCACCUuua -5'
14089 3' -50.7 NC_003521.1 + 192038 0.66 0.998687
Target:  5'- aCCGCcGGCGugcGCGGCAGACGcGGc--- -3'
miRNA:   3'- -GGUGuCUGC---UGCUGUCUGCaCCuuua -5'
14089 3' -50.7 NC_003521.1 + 190815 0.71 0.969833
Target:  5'- gCUACAGGagcCGACGACAGGCGcGGu--- -3'
miRNA:   3'- -GGUGUCU---GCUGCUGUCUGCaCCuuua -5'
14089 3' -50.7 NC_003521.1 + 188668 0.66 0.998911
Target:  5'- cCCGCGGuaccguCGcUGACGGGCG-GGGGAUa -3'
miRNA:   3'- -GGUGUCu-----GCuGCUGUCUGCaCCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 187883 0.66 0.999101
Target:  5'- aCCACcucGGGCGGC-ACGGGCGgcgGGGGc- -3'
miRNA:   3'- -GGUG---UCUGCUGcUGUCUGCa--CCUUua -5'
14089 3' -50.7 NC_003521.1 + 186773 0.68 0.995069
Target:  5'- uCgGCGGA-GGCGGCGGugGUGGc--- -3'
miRNA:   3'- -GgUGUCUgCUGCUGUCugCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 186621 0.68 0.99636
Target:  5'- gCUAC--GCGGCGGCGGugGUGGc--- -3'
miRNA:   3'- -GGUGucUGCUGCUGUCugCACCuuua -5'
14089 3' -50.7 NC_003521.1 + 182175 0.68 0.995755
Target:  5'- -gACGGACGGcCGGC--GCGUGGGGAUu -3'
miRNA:   3'- ggUGUCUGCU-GCUGucUGCACCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 179644 0.7 0.985779
Target:  5'- uCCACuGugGugGcCAGAUuGUGGGAGa -3'
miRNA:   3'- -GGUGuCugCugCuGUCUG-CACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 178924 0.68 0.994296
Target:  5'- aCCACGauGACGGCGACgAGGCuuccUGGAGc- -3'
miRNA:   3'- -GGUGU--CUGCUGCUG-UCUGc---ACCUUua -5'
14089 3' -50.7 NC_003521.1 + 178386 0.66 0.998687
Target:  5'- gCGCGcGCGGCGGgcuCAGACGaGGAGAUu -3'
miRNA:   3'- gGUGUcUGCUGCU---GUCUGCaCCUUUA- -5'
14089 3' -50.7 NC_003521.1 + 173240 0.69 0.992457
Target:  5'- aUCAUGGGCaucAUGAUGGGCGUGGGAGg -3'
miRNA:   3'- -GGUGUCUGc--UGCUGUCUGCACCUUUa -5'
14089 3' -50.7 NC_003521.1 + 169440 0.7 0.982101
Target:  5'- aCGCGGACGACGGCGucGGCGgcggcGGGu-- -3'
miRNA:   3'- gGUGUCUGCUGCUGU--CUGCa----CCUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.