miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14091 5' -50.2 NC_003521.1 + 134554 1.09 0.013612
Target:  5'- uUCCACAACAAGCACAUCAUCUGGCUGu -3'
miRNA:   3'- -AGGUGUUGUUCGUGUAGUAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 25647 0.69 0.983419
Target:  5'- aCCACGACAucaggcGGCAgAUCGUgCUGGUc- -3'
miRNA:   3'- aGGUGUUGU------UCGUgUAGUA-GACCGac -5'
14091 5' -50.2 NC_003521.1 + 113796 0.69 0.986964
Target:  5'- -gCGCGACGGGCACcgcggcggcGUCGUCgGGCa- -3'
miRNA:   3'- agGUGUUGUUCGUG---------UAGUAGaCCGac -5'
14091 5' -50.2 NC_003521.1 + 206991 0.66 0.999129
Target:  5'- gUCgACcGCAGGCugAUCGUC-GGUUa -3'
miRNA:   3'- -AGgUGuUGUUCGugUAGUAGaCCGAc -5'
14091 5' -50.2 NC_003521.1 + 206053 0.74 0.866046
Target:  5'- uUCCGCGACAuGCACcUCAUC-GGCg- -3'
miRNA:   3'- -AGGUGUUGUuCGUGuAGUAGaCCGac -5'
14091 5' -50.2 NC_003521.1 + 206641 0.74 0.888052
Target:  5'- gCCACGAUAAGCugGUCAagUUGGCc- -3'
miRNA:   3'- aGGUGUUGUUCGugUAGUa-GACCGac -5'
14091 5' -50.2 NC_003521.1 + 98255 0.73 0.919953
Target:  5'- gCCACGGCGGGCACggCGagcCUGGCg- -3'
miRNA:   3'- aGGUGUUGUUCGUGuaGUa--GACCGac -5'
14091 5' -50.2 NC_003521.1 + 153080 0.72 0.94563
Target:  5'- gUCCGCAGCuGGUcucggGCuUCGUCUGGCa- -3'
miRNA:   3'- -AGGUGUUGuUCG-----UGuAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 140794 0.7 0.971127
Target:  5'- -gCugGACGAGCcgcugcuGCGUCGUCUGGUg- -3'
miRNA:   3'- agGugUUGUUCG-------UGUAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 11455 0.69 0.983419
Target:  5'- gCCACGaacgacguguACAAGCgACGUCA-CUGGCa- -3'
miRNA:   3'- aGGUGU----------UGUUCG-UGUAGUaGACCGac -5'
14091 5' -50.2 NC_003521.1 + 68087 0.7 0.981395
Target:  5'- cCCGCAagaagaagaGCAAGCGCAUC-UCcGaGCUGg -3'
miRNA:   3'- aGGUGU---------UGUUCGUGUAGuAGaC-CGAC- -5'
14091 5' -50.2 NC_003521.1 + 127691 0.71 0.961393
Target:  5'- gUCCAgAGCGagAGCACAUCGUCgcgcaccUGGCc- -3'
miRNA:   3'- -AGGUgUUGU--UCGUGUAGUAG-------ACCGac -5'
14091 5' -50.2 NC_003521.1 + 17009 0.76 0.788893
Target:  5'- cCCGCGguggcggcggcGCAGGCcCGUCGUCUGGCg- -3'
miRNA:   3'- aGGUGU-----------UGUUCGuGUAGUAGACCGac -5'
14091 5' -50.2 NC_003521.1 + 93938 0.7 0.981395
Target:  5'- aCCGCuGCccGC-CGUCGUCUGGCUu -3'
miRNA:   3'- aGGUGuUGuuCGuGUAGUAGACCGAc -5'
14091 5' -50.2 NC_003521.1 + 196187 0.75 0.833647
Target:  5'- cUCCaACAcccACAGGCGCAUCAUCUGcaGCUc -3'
miRNA:   3'- -AGG-UGU---UGUUCGUGUAGUAGAC--CGAc -5'
14091 5' -50.2 NC_003521.1 + 175763 0.71 0.953764
Target:  5'- gUCCAgGaauucguGCAGGCGCGUCAUUagccggGGCUGc -3'
miRNA:   3'- -AGGUgU-------UGUUCGUGUAGUAGa-----CCGAC- -5'
14091 5' -50.2 NC_003521.1 + 124371 0.7 0.981395
Target:  5'- cCCACcACGGcCGCGUCGUCgUGGUUGa -3'
miRNA:   3'- aGGUGuUGUUcGUGUAGUAG-ACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 20434 0.69 0.985273
Target:  5'- gCCugGGCA---GCGUCuUCUGGCUGg -3'
miRNA:   3'- aGGugUUGUucgUGUAGuAGACCGAC- -5'
14091 5' -50.2 NC_003521.1 + 166863 0.75 0.858261
Target:  5'- cUCgCACAGCAGGCACA-CGgugCUGGuCUGg -3'
miRNA:   3'- -AG-GUGUUGUUCGUGUaGUa--GACC-GAC- -5'
14091 5' -50.2 NC_003521.1 + 27089 0.73 0.907931
Target:  5'- aCCACGGCcuucugcGGCGC--CGUCUGGCUGg -3'
miRNA:   3'- aGGUGUUGu------UCGUGuaGUAGACCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.