miRNA display CGI


Results 1 - 20 of 132 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14094 3' -57.1 NC_003521.1 + 240445 0.68 0.854016
Target:  5'- uGUUCCCGcGUGaGGCgG-GCAGCGGUc -3'
miRNA:   3'- gUAGGGGUuCAC-CCGgUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 239659 0.67 0.876034
Target:  5'- aGUCCCgUAGGcGGcGCCGUGgcucccggggaCGGCAGCg -3'
miRNA:   3'- gUAGGG-GUUCaCC-CGGUAC-----------GUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 238504 0.67 0.868896
Target:  5'- --gCCCCAGGa-GGCCGgcgcgaGCAGguGCg -3'
miRNA:   3'- guaGGGGUUCacCCGGUa-----CGUCguCG- -5'
14094 3' -57.1 NC_003521.1 + 233786 0.72 0.602954
Target:  5'- gCGUCUCC-GGUGGucuuucuaCGUGCAGCAGCg -3'
miRNA:   3'- -GUAGGGGuUCACCcg------GUACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 224031 0.66 0.925345
Target:  5'- --gCCCCAuaaUGGGCgCcgGCAGCAu- -3'
miRNA:   3'- guaGGGGUuc-ACCCG-GuaCGUCGUcg -5'
14094 3' -57.1 NC_003521.1 + 223451 0.66 0.930497
Target:  5'- gGUCCCUcucGAGUcuGGGCCGccGCGcCGGCg -3'
miRNA:   3'- gUAGGGG---UUCA--CCCGGUa-CGUcGUCG- -5'
14094 3' -57.1 NC_003521.1 + 223394 0.71 0.672836
Target:  5'- --gCCCCGAcGcGGGCCGUGUGGCgccccGGCg -3'
miRNA:   3'- guaGGGGUU-CaCCCGGUACGUCG-----UCG- -5'
14094 3' -57.1 NC_003521.1 + 223349 0.67 0.896183
Target:  5'- --gCCCCAGGccucggcgGcGGCCuugGuCAGCAGCg -3'
miRNA:   3'- guaGGGGUUCa-------C-CCGGua-C-GUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 221297 0.66 0.914358
Target:  5'- gAUCCUCGGGUccgaGGGCCA-GUAGUcccGCg -3'
miRNA:   3'- gUAGGGGUUCA----CCCGGUaCGUCGu--CG- -5'
14094 3' -57.1 NC_003521.1 + 219675 0.66 0.919965
Target:  5'- aCAgCCCCGGG-GGGCCcgcGCGGacggAGCa -3'
miRNA:   3'- -GUaGGGGUUCaCCCGGua-CGUCg---UCG- -5'
14094 3' -57.1 NC_003521.1 + 218025 0.69 0.813576
Target:  5'- --aCCCCGuucuUGGGCg--GCGGCGGCg -3'
miRNA:   3'- guaGGGGUuc--ACCCGguaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 214551 0.7 0.721947
Target:  5'- --gCCUCGAGaccGGuGCCugggGUGCAGCAGCg -3'
miRNA:   3'- guaGGGGUUCa--CC-CGG----UACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 211686 0.66 0.908524
Target:  5'- gGUCUgCAGcUGGuGCUggAUGUAGCAGCg -3'
miRNA:   3'- gUAGGgGUUcACC-CGG--UACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 211335 0.7 0.729662
Target:  5'- gGUCCCgCGGGcgcgagugguugGGGUCccGCAGCAGCc -3'
miRNA:   3'- gUAGGG-GUUCa-----------CCCGGuaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 209710 0.66 0.930497
Target:  5'- aCAggcgCUCCAGGUccgagGaGGUCGUGC-GCAGCg -3'
miRNA:   3'- -GUa---GGGGUUCA-----C-CCGGUACGuCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 204013 0.66 0.914358
Target:  5'- uCAUgCCCGAGUccGCCGUccGCgAGCGGCu -3'
miRNA:   3'- -GUAgGGGUUCAccCGGUA--CG-UCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 200843 0.68 0.846286
Target:  5'- aCAUCCUCAAGcauGCCGUGaCGGaCGGCg -3'
miRNA:   3'- -GUAGGGGUUCaccCGGUAC-GUC-GUCG- -5'
14094 3' -57.1 NC_003521.1 + 197648 0.7 0.750598
Target:  5'- gGUCgC--GGUGGcGCuCGUGCGGCAGCa -3'
miRNA:   3'- gUAGgGguUCACC-CG-GUACGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 196386 0.72 0.642921
Target:  5'- gCAUCgCCGAGccgccgucacgaUGGGCgG-GCAGCGGCa -3'
miRNA:   3'- -GUAGgGGUUC------------ACCCGgUaCGUCGUCG- -5'
14094 3' -57.1 NC_003521.1 + 195946 0.71 0.672836
Target:  5'- cCGUCCUgc-GUGGGCCAcagGCucuGGCAGCg -3'
miRNA:   3'- -GUAGGGguuCACCCGGUa--CG---UCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.