miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14096 3' -60.7 NC_003521.1 + 53208 0.72 0.428563
Target:  5'- cGGCCCGgCUcgCCcuGGCAGGCCgUGCCcACc -3'
miRNA:   3'- -CCGGGCgGAa-GG--UCGUCUGG-ACGG-UG- -5'
14096 3' -60.7 NC_003521.1 + 187616 0.72 0.428563
Target:  5'- cGGCCUGCCgggCgAGcCGGGCCgcgcGCCGCu -3'
miRNA:   3'- -CCGGGCGGaa-GgUC-GUCUGGa---CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 154480 0.72 0.445646
Target:  5'- cGGCaCCGCCggcgCCGGCaAGACCU-CCAg -3'
miRNA:   3'- -CCG-GGCGGaa--GGUCG-UCUGGAcGGUg -5'
14096 3' -60.7 NC_003521.1 + 170726 0.72 0.445646
Target:  5'- cGGCaCGCCggCCAGguGcCCUGCgGCa -3'
miRNA:   3'- -CCGgGCGGaaGGUCguCuGGACGgUG- -5'
14096 3' -60.7 NC_003521.1 + 130516 0.72 0.471965
Target:  5'- uGGCCCugcgGCUgcCCgAGCAGACCgugUGCCACc -3'
miRNA:   3'- -CCGGG----CGGaaGG-UCGUCUGG---ACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 205860 0.71 0.480913
Target:  5'- cGCCCGCgaUCUGGCcGACCUcugcgugcGCCGCg -3'
miRNA:   3'- cCGGGCGgaAGGUCGuCUGGA--------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 91073 0.71 0.480913
Target:  5'- cGGCCgcccuCGCCg--CAGaAGACCUGCCACu -3'
miRNA:   3'- -CCGG-----GCGGaagGUCgUCUGGACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 155488 0.71 0.480913
Target:  5'- cGCCgGCCUg-CGGCGGGCCgcggGCCAa -3'
miRNA:   3'- cCGGgCGGAagGUCGUCUGGa---CGGUg -5'
14096 3' -60.7 NC_003521.1 + 175007 0.71 0.487224
Target:  5'- cGGCCUGCUUgUCCAGCauggucuugaacagGGGCCgGCCGa -3'
miRNA:   3'- -CCGGGCGGA-AGGUCG--------------UCUGGaCGGUg -5'
14096 3' -60.7 NC_003521.1 + 69530 0.71 0.489941
Target:  5'- aGCaCCGCCUUCCAGCccacgcGGAUacagcgcagGCCACa -3'
miRNA:   3'- cCG-GGCGGAAGGUCG------UCUGga-------CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 239290 0.71 0.499048
Target:  5'- cGGCUCGUaguUUUCCAGCu--CCUGCCAg -3'
miRNA:   3'- -CCGGGCG---GAAGGUCGucuGGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 94042 0.71 0.499048
Target:  5'- gGGCCCGCCUUCUgucCAGGCCgguuCCAa -3'
miRNA:   3'- -CCGGGCGGAAGGuc-GUCUGGac--GGUg -5'
14096 3' -60.7 NC_003521.1 + 16803 0.71 0.499048
Target:  5'- cGCCCGCCccgaCCGcCGGGCCcGCCGCu -3'
miRNA:   3'- cCGGGCGGaa--GGUcGUCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 39062 0.71 0.499048
Target:  5'- cGGCUCGUaguUUUCCAGCu--CCUGCCAg -3'
miRNA:   3'- -CCGGGCG---GAAGGUCGucuGGACGGUg -5'
14096 3' -60.7 NC_003521.1 + 22478 0.71 0.50823
Target:  5'- uGGCCUGCCUggugaugaacaCCGGCAccACCgugGCCACg -3'
miRNA:   3'- -CCGGGCGGAa----------GGUCGUc-UGGa--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 49787 0.71 0.50823
Target:  5'- ---gCGUCggCCAGCAGACgCUGCCGCc -3'
miRNA:   3'- ccggGCGGaaGGUCGUCUG-GACGGUG- -5'
14096 3' -60.7 NC_003521.1 + 163093 0.71 0.50823
Target:  5'- cGGCCCGuCCUcgggcgCCAGCGccacGACCaccGCCGCc -3'
miRNA:   3'- -CCGGGC-GGAa-----GGUCGU----CUGGa--CGGUG- -5'
14096 3' -60.7 NC_003521.1 + 240731 0.71 0.517482
Target:  5'- cGGCCCGaaacacguCCgaCCGGCcGGCCcGCCGCa -3'
miRNA:   3'- -CCGGGC--------GGaaGGUCGuCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 182 0.71 0.517482
Target:  5'- cGGCCCGaaacacguCCgaCCGGCcGGCCcGCCGCa -3'
miRNA:   3'- -CCGGGC--------GGaaGGUCGuCUGGaCGGUG- -5'
14096 3' -60.7 NC_003521.1 + 122133 0.71 0.517482
Target:  5'- aGCCUGCCcuccaCCAGCGGuACC-GCCGCc -3'
miRNA:   3'- cCGGGCGGaa---GGUCGUC-UGGaCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.